Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTTTACTCATAAATTTCGACATGCTGATCCTTTGGCTCTTCGTCTTCTAGAGCGTTTGCTTGCATTTGATCCTAAAGACCGGCCTAGTGCAGAAGAGgtgaactcaattaaaatatgttttctttttctttcattagatctgctttccataaaaagatgtcacacgtatatatatatgcatttttgacattatattattatcttatcgtacttcag

Basic information

species Zea mays
transcript GRMZM2G135904_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135904_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g49430.1 (Oryza sativa), 5'ss of exon 6
GCCCTTTACTCATAAATTTCGACATGCTGATCCTTTGGCTCTTCGTCTTCTAGAGCGTTTGCTTGCATTTGATCCTAAAGACCGGCCTAGTGCAGAAGAGgtgaactcaatt-aaaatatgttttctttttctttcattagatct-gctttccataaaaagatgtcacacgtatatatatatgcatttttgacattatattattatcttatcgtacttcag
 |||||  |||| || || ||  || |||| || |||||||||||||| ||||||||||| || ||||||||||||||||| ||| ||   || ||||| || | |||||   |||  ||    || ||| |   | | | |  | | |||   | |||| |    ||    | | | | |  ||||||| | ||  ||| ||| ||||    |  |||||
CCCCTTCTCTCAGAAGTTCCGCAATACTGACCCCTTGGCTCTTCGTCTGCTAGAGCGTTTACTGGCATTTGATCCTAAAGATCGGTCTTCAGCTGAAGAAgtaagctcaagagaaagcatagcatcctttccaaacctcaaaagtagtttttttttaaaaaaaaaaactttcagaaa-acacacattttttatatgttat-attctcttccaat-tttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016391|gb|CO445140.1|CO445140
EST:     TAGAGCGTTTGCTTGCATTTGATCCTAAAGACCGGCCTAGTGCAGAAGAG                         GCTCTAGCTGATCCATACTTTGCATCCCTTGCTAATGTGGAACGTGAGCCA
genomic: TAGAGCGTTTGCTTGCATTTGATCCTAAAGACCGGCCTAGTGCAGAAGAGgtgaactcaa ... cgtacttcagGCTCTAGCTGATCCATACTTTGCATCCCTTGCTAATGTGGAACGTGAGCCA
EST: gi|61118794|gb|DN559755.1|DN559755
EST:     TAGAGCGTTTGCTTGCATTTGATCCTAAAGACCGGCCTAGTGCAGAAGAG                         GCTCTAGCCGATCCATACTTTGCATCCCTTGCTAATGTGGAACGTGAGCCA
genomic: TAGAGCGTTTGCTTGCATTTGATCCTAAAGACCGGCCTAGTGCAGAAGAGgtgaactcaa ... cgtacttcagGCTCTAGCTGATCCATACTTTGCATCCCTTGCTAATGTGGAACGTGAGCCA