1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtaatctgtgctgaaaactgaggtgtatagacaagattatgttccaaaagccttatgttacagctatccgaattctgacacgtttttattcacatgcagTACACTCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCTGAACTTCTCACTGGAAGGCCACTATTTCCTGGGAAGAATGTTGTACACCAATTAG
species | Zea mays |
transcript | GRMZM2G135904_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCTGAACTTEST: gi|22545672|gb|BU098031.1|BU098031
genomic: CAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTTTTCTCCAAAgtaatgtctc ... tcacatgcagTACACTCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCTGAACTT
EST: CAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCTGAACTTEST: gi|61118794|gb|DN559755.1|DN559755
genomic: CAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTTTTCTCCAAAgtaatgtctc ... tcacatgcagTACACTCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCTGAACTT
EST: CAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTTTTCTCCAAA TACACTCCTGCAATTGATATTTGGAGCATTGGCTGCATATTTGCTGAACTT
genomic: CAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTTTTCTCCAAAgtaatgtctc ... tcacatgcagTACACTCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCTGAACTT
caaaagccttatgttacagctatccgaattctgacacgtttttattcacatgcagTACACTCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCTGAACTTCTCACTGGAAGGCCACTATTTCCTGGGAAGAATGTTGTACACCAATTAG
ttctgac putative branch site (score: 2)
tttttattc putative PPT
tttttattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtaatctgtgctgaaaactgaggtgtatagacaagattatgttccaaaagccttatgttacagctatccgaattctgacacgtttttattcacatgcagTACACTCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCTGAACTTCTCACTGGAAGGCCACTATTTCCTGGGAAGAATGTTGTACACCAATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA