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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctagcttattccttagcgattggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag

Basic information

species Zea mays
transcript GRMZM2G132184_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g19700.1 (Oryza sativa), 5'ss of exon 3
AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctagcttattccttagcg-attggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
|||||||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||||| || |||  |   || || |    |||| | | | || || | |  |          |||| |   | | |  || ||    |||  |  |  | |    ||  |   |     |||   |  ||  |||   |      || |||||    || ||||| ||||||||||    | | ||  |    ||  || |||
AATTTGGTGAGGCTGATTGGATATTGTGTTGAAGATGACCAAAGATTGCTGGTTTATGAATTCATGCCTCGTGGAAGTTTAGATAACCATCTATTCAGAAgtacgtgtctgaccagtttctcaagacattgaaacttcaatttgtatacaatgcctgtgctttaatgaatgaacttatcatt-catatt-tgagtagctcttctgaagtgtttggtcattgcatcttgctgctggaaaaaatattaaatag----atagaaatattgaatcttatatgatttatgat----tcacctatag

upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G49060.1 (Glycine max), 5'ss of exon 3
-AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctagcttattccttagcgattggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
 ||| |||||| |||| |||| |  ||| |||||||||||||||| ||  |||| |||||||  ||||| ||||| |||||||| ||||| || || |||||||||  |  |   | |    |  | | |   |  ||  |||||  ||           |||||  ||  ||    |  |  || |  | ||   |     |  |||                                                                                             
AAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATGTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAagtatgctttgaatctgtcttatttctaatcatgtcttcgcttctgcttg----------tttatatctgcagtccttgtttttgcagtaaatttagtgaattcattggc-------------------------------------------------------------------------------------------

upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G16300.1 (Glycine max), 5'ss of exon 4
AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctagcttattccttagcgatt----ggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
 |  | || | | | ||||| || ||  |||||||||| ||||||||||| || |||||||| |||||||| || ||  |||| || ||  | ||||| |||| ||  |||  || |  |||  || ||       ||| ||      |      |   |  ||  | | || | |  ||| |     | |  |   |                                                                                                          
CACCTCGTTAAACTTATTGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTATATGAATTTATGCCTCGGGGAAGCCTGGAAAATCACTTGTTTAGGAgtaagttactattttctcacttctcggtttctcattgcagtatgaggccagataaaaatattttggacttctgatgtcaatgaaaacttttgctcaaaat--------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G37580.1 (Glycine max), 5'ss of exon 3
AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgta-----tgtatctagcttattccttagcgattggagcattaacttctctttaggatt-caccttttattccttaagcaaataatcgtgtat-catatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
||| |||||| |||| |||| |  ||| |||||||||||||||| ||  |||| |||||||  ||||||||||| |||||||| ||||| || || |||||||     || | ||  |||||| || |   ||     || ||     | ||||  | | ||    || ||  |  || ||||  | ||| || |||| ||                                                                                                          
AATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATGTATGCCTCGTGGAAGTTTGGAGAACCACCTCTTCAGAAgtacactttgaacctgtcttatttct-aatcatgtcttcactactgcttgtttataactgcagtccttgtttttgcagtaaatt-tagtgaattcataggat---------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 3
AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctagcttattccttagcgattggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
||  | || | | |  | || || ||  |||||||||| ||||||||||| || ||||||||||||||||| || ||  |||| |||||  | ||||| |||| ||  |||  ||||  || |    ||    ||||   |  | || | || | |   ||    |  |  ||      | |    |   || |      ||                                                                                                  
AACCTTGTTAAACTTGTAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTGTATGAATTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagttactattttatatctaattagtttcgacatt--ttctttttcaagaataatagttggaccact--gctgcaccttgaaattttaataacatcaaatga------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G02360.1 (Glycine max), 5'ss of exon 2
AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgta-tgtatctagcttattccttagcgattggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgaggg-tgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
||| | || |  |||||||| |  ||| |||||||||||||||| || ||||| ||||| || ||||| || ||||||||||| ||||| || |||||||||| | ||   | ||| ||  ||      |  | | ||    | | | | | ||        || | |||    || ||   ||||| || || ||   |||                                                                                                    
AATCTTGTTAAGTTGATTGGTTTCTGTATTGAAGATGACCAAAGATTACTGGTTTATGAGTTTATGCCCCGAGGCAGTTTGGAGAACCACCTCTTTAGAAgtactctactaacctttttttttctttggtaaaccttttctatttgtattgcatgtcttcactactgcttgtttaatta--tgtgtaacacattagaactgc----------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: AT3G28690.1 (Arabidopsis thaliana), 5'ss of exon 2
AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctagcttattccttagcgattggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
| | |||| | |||  |||| || ||  | ||||| ||||||||| |||| || || || || ||||| || || |||||||| ||||||||||| |||||||||| | | ||  |   ||         |  |||   ||||| | |  |     | ||    |   |   | ||| | | ||| |    |     | ||||   | || |                                                                                        
AGTCTGGTTAAATTAGTTGGCTACTGCATGGAAGAAGACCAAAGGCTGCTTGTTTACGAGTTTATGCCACGAGGAAGTTTGGAGAACCATCTTTTCAGAAgtatgtctatcgcaaacctct---------gcacatcttcttctttctgagg---gctttgaggtgtctcgtctaattaccatgtttttcttt---tttcatttgggttcag----------------------------------------------------------------------------------------

upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: AT5G15080.1 (Arabidopsis thaliana), 5'ss of exon 3
AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctagcttattccttagcgattggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
||| | || |   |  |||| |||||  |||||||||| ||||||||||| || ||||| || |||||| | || ||| |||| || || ||||| ||||||||||||  | |  |    ||             | || || | |  | | || | | ||  || |||| |  | |  |  | |    | | | |                                                                                                        
AATCTAGTTAAGCTTGTTGGTTATTGCATTGAAGATGATCAAAGGTTGCTTGTGTATGAGTTTATGCCTAGAGGAAGTCTGGAGAATCACCTTTTCAGAAgtatgtataaatcaaaccattt-------------taaagttgtttccatgtttaatcgtt--tttcttatgatactggtgctttcatgtttaaag--------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctagcttattccttagcgattggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
||| |||||| | ||||||| |||||  |||||||||| ||||||||||| || ||||| || |||||||| || |||||||| || ||||| ||||| |||||||| ||  |||  |  |          |  ||||   ||   ||    |||     | | |  |  ||| |  |||| || ||| |   | | | | ||||   |  |                                                                                        
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctttctgtt----------aatattattctcatctttcatttccttaatgaattttggagcta--aatcttgaatcttt--acgattccttgtacttacgta--------------------------------------------------------------------------------------

upper sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0108g00380.t01 (Vitis vinifera), 5'ss of exon 3
AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatct-agcttattccttagcgattggagcattaacttctctttaggattcaccttttattccttaagcaaataa-tcgtgtatcata-tgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
|||||||| | ||| ||||| |||||  |||| ||||| |||||| |||| || ||||| || ||||||||||| || ||||| || || ||||| |||||||  || || | ||||||  ||  |        ||| || ||  || |           || |||  |||| | || |  |||||||| | | |     |    | |                                                                                               
AATTTGGTTAAATTAATTGGTTATTGCATTGAGGATGATCAAAGGCTGCTTGTTTATGAGTTTATGCCTCGTGGAAGCTTGGAGAATCACCTTTTCAGAAgtacataactgaacttattttttccc--------catgaatttggctgtcatgcatggtattaattgtttaatctaagatctcgtgtattaaaatatcaatatggtat-----------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282950|gb|DV022518.1|DV022518
EST:     GGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAA                         GGTCTCTTCCTCTCCCATGGGCAATCAGAATGAAGGTTGCACTCGGAGCAG
genomic: GGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatct ... tctgctgtagGGTCTCTTCCTCTCCCATGGGCAATCAGAATGAAGGTTGCACTCGGAGCAG
EST: gi|148928770|gb|EC873531.2|EC873531
EST:     GGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAA                         GGTCTCTTCCTCTCCCATGGGCAATCAGAATGAAGGTTGCACTCGGAGCAG
genomic: GGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatct ... tctgctgtagGGTCTCTTCCTCTCCCATGGGCAATCAGAATGAAGGTTGCACTCGGAGCAG
EST: gi|5499049|gb|AI854916.1|AI854916
EST:     GGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAA                         GGTCTCTTCCTCTCCCATGGGCAATCAGAATGAAGGTTGCACTCGGAGCAG
genomic: GGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatct ... tctgctgtagGGTCTCTTCCTCTCCCATGGGCAATCAGAATGAAGGTTGCACTCGGAGCAG