1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAAGAAAATGGAACTGCACCTGTGAAACCTGGTACAGGTCTCACAGTTGCTGTCAAGACGCTGAACCATGACGGGCTTCAAGGGCATAAAGAATGGGTGgtatgtgctatgttttacctattttcaagttcacatatcatcttgtttacatgtttttggtttcaattcatgatgagactgatactctgttttgattgatcttttccag
species | Zea mays |
transcript | GRMZM2G132184_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGTCAAGACGCTGAACCATGACGGGCTTCAAGGGCATAAAGAATGGGTG GCTGAAGTTGATTTTCTTGGAAATCTTCACCATCCCAATTTGGTCAGATTGEST: gi|148928770|gb|EC873531.2|EC873531
genomic: CTGTCAAGACGCTGAACCATGACGGGCTTCAAGGGCATAAAGAATGGGTGgtatgtgcta ... tcttttccagGCTGAAGTTGATTTTCTTGGAAATCTTCACCATCCCAATTTGGTCAGATTG
EST: CTGTCAAGACGCTGAACCATGACGGGCTTCAAGGGCATAAAGAATGGGTG GCTGAAGTTGATTTTCTTGGAAATCTTCACCATCCCAATTTGGTCAGATTGEST: gi|5499049|gb|AI854916.1|AI854916
genomic: CTGTCAAGACGCTGAACCATGACGGGCTTCAAGGGCATAAAGAATGGGTGgtatgtgcta ... tcttttccagGCTGAAGTTGATTTTCTTGGAAATCTTCACCATCCCAATTTGGTCAGATTG
EST: CTGTCAAGACGCTGAACCATGACGGGCTTTATGGGCATAAAGAATGGGTG GCTGAAGTTGATTTTCTTGGAAATCTTCACCATCCCAATTTGGTCAGATTG
genomic: CTGTCAAGACGCTGAACCATGACGGGCTTCAAGGGCATAAAGAATGGGTGgtatgtgcta ... tcttttccagGCTGAAGTTGATTTTCTTGGAAATCTTCACCATCCCAATTTGGTCAGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGAAAATGGAACTGCACCTGTGAAACCTGGTACAGGTCTCACAGTTGCTGTCAAGACGCTGAACCATGACGGGCTTCAAGGGCATAAAGAATGGGTGgtatgtgctatgttttacctattttcaagttcacatatcatcttgtttacatgtttttggtttcaattcatgatgagactgatactctgttttgattgatcttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA