1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgcagatggagcttttgcttttctttgttgagatcatattgtcagaagactctcttttgtcagtatgacatactaaaatattgtaatttcatgtaacagCAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGGTGGCATTGGTAGTCTCAGGTTCTACAACTACTAGTAATGCTGAAAGCAGTTCATCTGCATC
species | Zea mays |
transcript | GRMZM2G132184_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGG CAGAGAAGTCAACAGAAAATGEST: gi|148930993|gb|EC873532.2|EC873532
genomic: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAACAGAAAATG
EST: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGG CAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGGTGGCATTGGTAGEST: gi|89762820|gb|DY690260.1|DY690260
genomic: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGGTGGCATTGGTAG
EST: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGG -AGA-A-GTCCACAGAAAATGGTAGTAGGAATCAACCGGGTGGCATTGGTAEST: gi|71773309|gb|DR971217.1|DR971217
genomic: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGG-TGGCATTGGTA
EST: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGG -AGA-A-GTCAACAGAAAATGGTAGTAGGAATCAACCGGGGGGCATTGGTAEST: gi|211069315|gb|FL193614.1|FL193614
genomic: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGGTGG-CATTGGTA
EST: GCAGAGGTCCAAGGTCGACACCTCCAC-AGCAGCGCCAGCACGCACGGGG -AGA-A-GTCAACAGAAAATGGTAGTAGGAATCAACCGGTGGGCATTGGTAEST: gi|71441100|gb|DR822150.1|DR822150
genomic: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGGTGG-CATTGGTA
EST: CAGAGGTCCAAGGTCGACACCTCCCAC-AGCAGCGCCAGCACGCACGGGG CAGAGAAGTCAACAGAAAAEST: gi|76916337|gb|DV166341.1|DV166341
genomic: CAGAGGTCCAAGGTCGACACCTCC-ACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAACAGAAAA
EST: GCAGAGGTCCA-GGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGG CAGAGAAGTCAACAEST: gi|76934438|gb|DV173883.1|DV173883
genomic: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAACA
EST: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGG CAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGGTGGCATTGGTAGEST: gi|211069314|gb|FL193613.1|FL193613
genomic: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGGTGGCATTGGTAG
EST: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGG -A-AGA-GTCAACNAGTAA-TGGTAGTAGGAATCAEST: gi|211072047|gb|FL193622.1|FL193622
genomic: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAAC-AGAAAATGGTAGTAGGAATCA
EST: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGG --GAGA-GTCAACAGAA
genomic: GCAGAGGTCCAAGGTCGACACCTCCACCAGCAGCGCCAGCACGCACGGGGgtagacgtct ... catgtaacagCAGAGAAGTCAACAGAA
gaagactctcttttgtcagtatgacatactaaaatattgtaatttcatgtaacagCAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGGTGGCATTGGTAGTCTCAGGTTCTACAACTACTAGTAATGCTGAAAGCAGTTCATCTGCATC
tactaaa putative branch site (score: 24)
atactaaaatattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcagatggagcttttgcttttctttgttgagatcatattgtcagaagactctcttttgtcagtatgacatactaaaatattgtaatttcatgtaacagCAGAGAAGTCAACAGAAAATGGTAGTAGGAATCAACCGGTGGCATTGGTAGTCTCAGGTTCTACAACTACTAGTAATGCTGAAAGCAGTTCATCTGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG