1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTGTCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTTGAAGGGACATGGATATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGAATgtaagtctcctacggattttggtttaacattgtattggacggtgcatgcaaaactttgtttatgtagcaaaacaatccatgcag
species | Zea mays |
transcript | GRMZM2G130287_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGCGAAGGGTGTTGGCAACTTGAAT GTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGTAGGGGTGEST: gi|14244179|gb|BG841849.2|BG841849
genomic: GGGCGAAGGGTGTTGGCAACTTGAATgtaagtctcc ... atccatgcagGTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGTAGGGGTG
EST: AAGGGACATGGATATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGAAT GTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGCAGGGGTGEST: gi|16745993|gb|BM032423.1|BM032423
genomic: AAGGGACATGGATATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGAATgtaagtctcc ... atccatgcagGTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGTAGGGGTG
EST: ATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGAAT GTTGAGGACTTCTTGGACCTGATCTCAGAATTTTGCCAGATCGGTAGGGGTEST: gi|88758413|gb|DY542782.1|DY542782
genomic: ATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGAATgtaagtctcc ... atccatgcagGTTGAGGACTTCTTGGACC-GATCTCAGAATTTTGCCAGATCGGTAGGGGT
EST: CGAAGGGTGTTGGCAACTTGAAT GTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGTAGGGGTGEST: gi|32930773|gb|CF035585.1|CF035585
genomic: CGAAGGGTGTTGGCAACTTGAATgtaagtctcc ... atccatgcagGTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGTAGGGGTG
EST: AAGGGACATGGATATCGAAGACCTGGGCGAAGGGTGTTGGTAACTTGAAT GTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGTAGGGGTGEST: gi|18384745|gb|BM417944.1|BM417944
genomic: AAGGGACATGGATATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGAATgtaagtctcc ... atccatgcagGTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGTAGGGGTG
EST: ATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGAAT GTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGTAGGGGTG
genomic: ATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGAATgtaagtctcc ... atccatgcagGTTGAGGACTTCTTGGACCGATCTCAGAATTTTGCCAGATCGGTAGGGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGTCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTTGAAGGGACATGGATATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGAATgtaagtctcctacggattttggtttaacattgtattggacggtgcatgcaaaactttgtttatgtagcaaaacaatccatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA