1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtattgtacctgtgaaactgtatttttttttacaaagtttacacgttattgtggctcattctgctcaattgcgtacacttttggacttatttggtgcagCTAGTGTCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTTGAAGGGACATGGATATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGA
species | Zea mays |
transcript | GRMZM2G130287_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAGCAATAAAGAGTCTATTGCTGAACTTTTTGTATCACTAATGAGTAAA CTAGTGTCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTTEST: gi|32930773|gb|CF035585.1|CF035585
genomic: ACAGCAATAAAGAGTCTATTGCTGAACTTTTTGTATCACTAATGAGTAAAgtgagttgtt ... tttggtgcagCTAGTGTCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTT
EST: ACAGCAATAAAGAGTCTATTGCTGAACTTTTTGTATCACTAATGAGTAAA CTAGTGTCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTT
genomic: ACAGCAATAAAGAGTCTATTGCTGAACTTTTTGTATCACTAATGAGTAAAgtgagttgtt ... tttggtgcagCTAGTGTCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTT
gttattgtggctcattctgctcaattgcgtacacttttggacttatttggtgcagCTAGTGTCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTTGAAGGGACATGGATATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGA
cttattt CT-rich tract
acttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtattgtacctgtgaaactgtatttttttttacaaagtttacacgttattgtggctcattctgctcaattgcgtacacttttggacttatttggtgcagCTAGTGTCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTTGAAGGGACATGGATATCGAAGACCTGGGCGAAGGGTGTTGGCAACTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - gtacctg
- - - - - - - - - -tgtattt