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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcgattctcctgcacacgctcctttttcttctctgatgtcatggttatggagtgcagtggatggatgctgaaatttctgccggtctgaatcacagGAACCGTGCTGGGGTTGTATGAGGACAACAGATACAAGTCTGAATCGAAAAAGGTGCACCTGAAACAGGTTGATATTATTGGACTAGGTTCTGGTGCGGA

Basic information

species Zea mays
transcript GRMZM2G126913_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126913_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g55140.1 (Oryza sativa), 3'ss of exon 2
gtactcgattctcctgcacacgctcctttttcttctctgatgtcatggttatggagtgcagtggatggatgctgaaatttctgccggtctgaatcacagGAACCGTGCTGGGGTTGTATGAGGACAACAGATACAAGTCTGAATCGAAAAAGGTGCACCTGAAACAGGTTGATATTATTGGACTAGGTTCTGGTGCGGA
||| |   |  || ||   | ||||||||        || ||| ||  || |||  |||| ||| | ||||||||| ||| |     |||| ||  ||||||| ||||| ||| || | ||||||| |||||||||||| || ||||| |||||||| || ||||| || ||| |||| ||| | ||||||||| | ||
gtagt--gtgatcttg---atgctcctttcatggaattgttgtgatc-ttgtgggatgcattggcttgatgctgaattttatctgtatctggattgcagGAACTGTGCTTGGGCTGCACGAGGACAGCAGATACAAGTCGGAGTCGAAGAAGGTGCATCTTAAACAAGTAGATCTTATCGGATTTGGTTCTGGTCCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggttatggagtgcagtggatggatgctgaaatttctgccggtctgaatcacagGAACCGTGCTGGGGTTGTATGAGGACAACAGATACAAGTCTGAATCGAAAAAGGTGCACCTGAAACAGGTTGATATTATTGGACTAGGTTCTGGTGCGGA
                            tgaaattt  TA-rich tract