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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcatcacttgttcaaatcctctttatctgtctaatgaatattactccccatgtctattattttccttcaatactcatacaagtctataaatcttattgtctgtgcctgtttttaacagAGTGATCGGCTGAAGCAAGTCATGGAACATCTTAACACTTTGCATTCGTTATGCGAGGTGCTTGGTGTAGACTTCAAACAAACAGTAAATGAGGTGCACC

Basic information

species Zea mays
transcript GRMZM2G126913_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32839865|gb|CD979546.1|CD979546
EST:     GAAAGCTGGAGGAGCTAACGAAAGAGCTGCAATCCCTTCAGAAGGAGAAG                         AGTGATCGGCTGAAGCAAGTCATGGAACATCTTAACACTTTGCATTCATTA
genomic: GAAAGCTGGAGGAGCTAACGAAAGAGCTGCAATCCCTTCAGAAGGAGAAGgttagcatca ... tttttaacagAGTGATCGGCTGAAGCAAGTCATGGAACATCTTAACACTTTGCATTCGTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcaatactcatacaagtctataaatcttattgtctgtgcctgtttttaacagAGTGATCGGCTGAAGCAAGTCATGGAACATCTTAACACTTTGCATTCGTTATGCGAGGTGCTTGGTGTAGACTTCAAACAAACAGTAAATGAGGTGCACC
                                         cctgttttt  CT-rich tract
                   tctataaatcttatt  TA-rich tract