1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATTCCGGTTCTAGATGATGAGCATGTTAAGGACGTTCATCTCGATCCTTTAGCTGGCCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCGGAAAAGgttaggcagcctttttttcactttcctgttgttgctctcatgtattgtactaccacatatgatgtttatattagagaaaagtgttgtgttcactgttttt...
species | Zea mays |
transcript | GRMZM2G126218_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGCTGGCCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCGGAAAAG GTTGATTATTTGAATCTGAAAAGCAATCAAAGGTTGATCTTTACAAGAAGAEST: gi|67020298|gb|CO449047.1|CO449047
genomic: TAGCTGGCCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCGGAAAAGgttaggcagc ... ttgtgcttagGTTGATTATTTGAATCTGAAAAGCAATCAAAGGTTGATCTTTACAAGAAGA
EST: TAGCTGGCCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCGGAAAAG GTGGATTATTTGAATCTGAAAAGCAATCAAAGGTTGATCTTTACAAGAAGAEST: gi|211237245|gb|FL442162.1|FL442162
genomic: TAGCTGGCCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCGGAAAAGgttaggcagc ... ttgtgcttagGTTGATTATTTGAATCTGAAAAGCAATCAAAGGTTGATCTTTACAAGAAGA
EST: TAGCTGGCCCAGTAGATGCCTTTTGCCTTSTGGTTCTTGATCCGGAAAAG GTTGATTATTTGAATCTGAAAAGCAATCAAAGGTTGATCTTTACAAGAAGA
genomic: TAGCTGGCCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCGGAAAAGgttaggcagc ... ttgtgcttagGTTGATTATTTGAATCTGAAAAGCAATCAAAGGTTGATCTTTACAAGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTCCGGTTCTAGATGATGAGCATGTTAAGGACGTTCATCTCGATCCTTTAGCTGGCCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCGGAAAAGgttaggcagcctttttttcactttcctgttgttgctctcatgtattgtactaccacatatgatgtttatattagagaaaagtgttgtgttcactgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaaaa