1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTTGTTGGTACTTCACAGATAGCTGGGAGCAATTCCGTATCAGTGGCAGCATAGATGTGATTGATGCTTCTACTACAGACCCTGCCAAGCTCCAGgttagacctgagagctgattactgctgcatttcacctacgtgctttatagagtgcactggtctggtaacgctttgagcacacagccaggtgtttgttcta...
species | Zea mays |
transcript | GRMZM2G126218_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAGCATAGATGTGATTGATGCTTCTACTACAGACCCTGCCAAGCTCCAG CACAAGGAGAAAGCATGGTTTTCAAGEST: gi|18170309|gb|BM340149.1|BM340149
genomic: GCAGCATAGATGTGATTGATGCTTCTACTACAGACCCTGCCAAGCTCCAGgttagacctg ... tctttcacagCACAAGGAGAAAGCATGGTTTTCAAG
EST: GCAGCATAGATGTGATTGATGCTTCTACTACAGACCCTGCCAAGCTCCAG CACAAGGAGAAAGCATGGTTTTCAAGTTCAGTGAAGTCGAGATCGCAGTACEST: gi|67020298|gb|CO449047.1|CO449047
genomic: GCAGCATAGATGTGATTGATGCTTCTACTACAGACCCTGCCAAGCTCCAGgttagacctg ... tctttcacagCACAAGGAGAAAGCATGGTTTTCAAGTTCAGTGAAGTCGAGATCGCAGTAC
EST: GCAGCATAGATGTGATTGATGCTTCTACTACAGACCCTGCCAAGCTCCAG CACAAGGAGAAAGCATGGTTTTCAAGTTCAGTGAAGTCGAGATTGCAGTACEST: gi|211237245|gb|FL442162.1|FL442162
genomic: GCAGCATAGATGTGATTGATGCTTCTACTACAGACCCTGCCAAGCTCCAGgttagacctg ... tctttcacagCACAAGGAGAAAGCATGGTTTTCAAGTTCAGTGAAGTCGAGATCGCAGTAC
EST: TACTACAGACCCTGCCAAGCTCCAG CACAAGGAGAAAGCATGGTTTTCAAGTTCAGTGAAGTCGAGATCSCAGTAC
genomic: TACTACAGACCCTGCCAAGCTCCAGgttagacctg ... tctttcacagCACAAGGAGAAAGCATGGTTTTCAAGTTCAGTGAAGTCGAGATCGCAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGTTGGTACTTCACAGATAGCTGGGAGCAATTCCGTATCAGTGGCAGCATAGATGTGATTGATGCTTCTACTACAGACCCTGCCAAGCTCCAGgttagacctgagagctgattactgctgcatttcacctacgtgctttatagagtgcactggtctggtaacgctttgagcacacagccaggtgtttgttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT