ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag

Basic information

species	Zea mays
transcript	GRMZM2G126190_T01
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 4

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataac-acttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||   | ||   ||||     ||     ||| ||  |||| |  | ||  | ||    || |   || ||||     |    |                        
ACCAAGCAGCATGAAGATCAAGGTGGTGGCACCGCCTGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTTAGCACCTTCCAACAGgt--aaaccttacgcctacactttatgaggtagcaagaatg-caggtatttctgctttctgttaacatcatt---cttttggcatctatgctacag---------------------

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| || ||||| ||||||||||| ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||| |     || |     || ||       | |  ||    ||  | | ||||   || | | |  | |   |  | |||||| |  |                            
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgt-----ttattgcaaatta-tctcttccacacgtgtaccaa---ttagattgaactaaacatgttttggttttgcag---------------------------

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G05570.1 (Glycine max), 5'ss of exon 4

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct---tataacacttgttattttcca-gttgctatggcaaatattccaacctttcggtagttccagt----aagctcttggttctaaaaacatgctctcgtat-ttatatgctacag
 || || |||||||||||||||||||| || || || ||||| || |||||||||||||| || || || ||| | || || || ||||||||||||||||||   ||     | |    | || |||| || |  |  |     ||  | |||  ||   |     ||   |||            |||  | |     | || |  | | |||||||      
ACCCAGTAGCATGAAAATCAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCACTTAGCACCTTCCAACAGgtttgtactgatgtttttttcctgctattctcaacatccccccctcatttgttcttacaagtaaaatgtattagtttatggaaggcaggtattgagtgtgtactttgttctcttatatgtag---

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 4

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| || ||||| ||||||||||| ||||| || || ||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||| |     || |     || |||      || | || || |  || | ||||       |||| |  | |      |||      | |||||| | | || |||  |        
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTCTGGATTGGAGGATCAATCCTTGCGTCCCTCAGCACCTTCCAGCAGgtga-----ttgtttagtttattacaaattagct-ctttgacgcatgtgccaa-------gtagattgaat------ttgaactctagaacatgttttggt-tttgcag-------

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G15480.1 (Glycine max), 5'ss of exon 4

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataac--acttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| || ||||| || |||||||| || || ||||| ||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||| |  |  |||| |   | | | | |||      ||| ||        || ||    ||   |  |   |  ||  |  ||||| |  |                            
TCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattattttatcatgaattagctctttcgtgtgtgccat--------tttca----ttgaatgctaaaaaaaatgttgtggttttgcag---------------------------

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 3

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttg--gttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| || ||||| || |||||||| || || ||||| ||||||||||| ||||| || |||||||| ||||| |||||||||||||||||   |  ||| || || |  |||          ||| |  ||  | |||||   ||||  |  || |   ||  | |||  ||| |  |                            
TCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGgt--gattcttttatcattaatta----------gctcttccatgtgttcca--ttttcattgattgctaaaaaatgttgtggttttgcag---------------------------

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 4

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacc-----ttataacacttgttattttccagttgctatggcaaatattccaacctttcg-gtagttcca-gtaagctct-tggttctaaaaacatgctctcgtatttatatgctacag----------
 || ||||||||||||||||||||||| || || || ||||| || |||||||||||||| || || || ||| | || || || ||||||||||||||||||   ||      || |  | | |  |||| || |  | |     |  |  | ||  | ||  | ||| || || ||||  | | |   | ||   | |   |   || ||||  |  | |            
ACCCAGCAGCATGAAAATCAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCATCACTTAGCACCTTCCAACAGgtttgtactgatgttttttccccctcctattctcaacatcccccctcccacctcccccctttatgtgtacttacaagtaaaatgtattagtttatggaaagcattgagtgtttactttgttctcttatatgcag

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 5'ss of exon 4

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgcta-cag
||||||||||||||| || ||||| ||||| |||||||||||||| |||||||||||||| || || || |||||||| ||||| ||||| ||||| ||||| |||      |  || || | | |||    ||  | |||   ||      |  | | |  |  |||  |||     |||||   |     ||     || | | | ||  | |||
CCCGAGCAGCATGAAGATTAAGGTCGTGGCACCACCCGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCTATCCTTGCTTCCCTCAGCACTTTCCAGCAGgtaaaattggactgtcatttctaagtttttgcttcttgtggttgatt-----aaatgtagacaactcctctaa-----tggtttacattttctgtgtgtgtgtgtgtgtgtaatcag

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 4

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctct-cgtatttatatgctacag
 || ||||||||||| ||||||||||| || || || ||||| ||||||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||| |||| |      || ||     | |  |     |   ||      ||||   |||  | |     ||| |        | || |||   || | |   | | | | ||   |||
ACCTAGCAGCATGAAGATCAAGGTGGTTGCACCGCCAGAGAGAAAATACAGTGTCTGGATCGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGgtaaaaatcc-----caattccgcctctttaaaactttcagc------tcca---tttatgaaacatgagtgaa-----aatactgaaattttgttttgtttgtgtgtgtgaatcag

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT3G18780.2 (Arabidopsis thaliana), 5'ss of exon 3

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| || ||||| || || ||||| || ||||| |||||||||||||| || || ||||| ||||| ||||| ||||| ||||| ||||| ||||      |    |||||          |   |||  || |      |      | |  ||   |||   | ||||||  |                              
ACCAAGCAGCATGAAGATTAAGGTCGTTGCACCACCTGAAAGGAAGTACAGTGTCTGGATCGGTGGTTCCATTCTTGCTTCCCTCAGCACATTCCAGCAGgtaaaaattgatcagattttgtttcgaattctcttacatgcaaattgaaatcaaaggctgattatttatgtata-tgttggttacag-----------------------------

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 5'ss of exon 3

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| |||||||||||||| || |||||||| || |||||||||||||| ||||| || ||  | || || || ||||| ||||||||||| ||||  |  |     || ||  |  |||  || | |||     ||   |  |     | ||||   || |  | || ||   | |  |    ||    ||||| |   | |||
TCCCAGCAGCATGAAGATCAAGGTGGTGGCACCTCCCGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATATTAGCATCTCTCAGCACATTCCAACAGgtaaaaaattgtt-----ttatttgtgccca--tgatgtgggtggaatgatagtc---aaggagttt--gtga-ttgttagtctcagagtctcattcc---atttaaaaattgcag

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 5

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatat--tccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| |||||||||||||| ||||| ||||| || |||||||||||||| ||||| || || ||||| ||||| ||||||||||| |||||    |  ||    || || || ||||   |||  ||       | |  | |     ||   |  | | |  | ||| || |||   | |                           
TCCCAGCAGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATTCTTGCATCCCTCAGCACCTTCCAGCAGgt---gatttt----cattttttgttttt-ggtttttacaaatggtttgattcttttattgcatgatactaacatgctttttgttggtacag--------------------------

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttc-taaaaacatgctctcgtatttatatgctacag
 ||    |||||||| || ||||||||||| || || |||||||| |||||||| |||||||||||||| ||  | || || || || ||||||||||||||       |||||    ||    ||    ||||||        ||| ||  |  |||   |   |    |    | |   | | |    || || |   || |||  |        
ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttata----ttacagttgcttagttgc----atgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag-------

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 5

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagt--tgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaac-atgctctcgtatttatatgctacag------------------
 ||    |||||||| || ||||||||||| || || |||||||| |||||||| |||||||||||||| ||  | || || || || |||||||||||||| |     ||    |   | | | || |   |  || | |     || |    |  | |  ||   | ||  | ||||  | || |  |  |  |  |||       || |  | |                    
ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtaatgtatttgactcgtgtctgagttgcatttcgtgtttttttttatgtcttcatgtctttgtttcttcaa-atgctcgcgtttgtcgaggctgtaatctttctggaatttaatccgtttacttgttgtggtgcag

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S372_48V6.1 (Physcomitrella patens), 5'ss of exon 3

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttcca-gttgc-tatggcaaatattccaacctttcggtagttc-cagtaagctcttg-----gttctaaaaacatgctc----tcgtatttatatgctacag-----------------
 |||   |||||||| |||||||||||||| || || |||||||| ||||| || ||||| ||||| |||||| | || ||||| ||||||||||| ||||| ||   || |     | || ||||||| | ||||    ||| |||||||  ||| | |    ||||  ||||  |   |||     |||   | |   || |       || |||  |   ||  |                 
GCCGTCAAGCATGAAGATCAAGGTGGTGGCGCCTCCGGAGAGGAAGTACAGCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaa---ctgagtttgcatgatattttctacgttggacgtggtaaatattg-aacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcaca-tattgttctttctgtggtgcag

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 3

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| ||||||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||| || || || |||||||||||||||||    |||  | |||| |  ||   |     ||  |||      | ||      ||||| |  |  |||                                              
TCCCAGCAGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATTGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgt----acc--acaacattcttttgctcgtttttcttatcagccttgtttttctttttcgtttctcgcag----------------------------------------------

upper sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 3

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgt--taaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag
 || ||||||||||| ||||||||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||| || || || |||||||||||||||||   | ||| || |    || ||  |||||   |     | |    | ||      |||  | ||                                                    
TCCCAGCAGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATCGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgtaccacaacattcttttgctcgt--ttttcttatcagccttgtttttctttttcttttttcgcag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|84977150|gb|DW475572.1|DW475572

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGC

EST: gi|111189563|gb|EE287699.1|EE287699

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|211450953|gb|FL443661.1|FL443661

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|37374377|gb|CF623541.1|CF623541

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCTTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|149106003|gb|EE291647.2|EE291647

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|194716941|gb|FK934100.1|FK934100

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTAC

EST: gi|211273038|gb|FL480297.1|FL480297

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|18179221|gb|BM380431.1|BM380431

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|60341930|gb|DN208903.1|DN208903

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|4630555|gb|AI621429.1|AI621429

EST:     GGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|34391132|gb|CF384360.1|CF384360

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|30087419|gb|CB885625.1|CB885625

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|13150624|gb|BG320946.1|BG320946

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|32945224|gb|CF050043.1|CF050043

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGT

EST: gi|60354568|gb|DN221541.1|DN221541

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|32945491|gb|CF050310.1|CF050310

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTA

EST: gi|33093027|gb|CF053021.1|CF053021

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGT

EST: gi|116815225|gb|EC857879.1|EC857879

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|78111212|gb|DV529609.1|DV529609

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|13150070|gb|BG320392.1|BG320392

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|32944376|gb|CF049195.1|CF049195

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTAC

EST: gi|29945818|gb|CB815835.1|CB815835

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|32840314|gb|CD979995.1|CD979995

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTAC

EST: gi|60397118|gb|DN229937.1|DN229937

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|211367041|gb|FL430758.1|FL430758

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|60346148|gb|DN213121.1|DN213121

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|148951112|gb|EC896783.2|EC896783

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|32945478|gb|CF050297.1|CF050297

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTA

EST: gi|18650347|gb|BM499166.1|BM499166

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|6012368|gb|AW061724.1|AW061724

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|5468713|gb|AI834504.1|AI834504

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGT

EST: gi|32844531|gb|CD984212.1|CD984212

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGT

EST: gi|32844526|gb|CD984207.1|CD984207

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGT

EST: gi|8516525|gb|BE123250.1|BE123250

EST:     ACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: ACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

EST: gi|211369686|gb|FL430759.1|FL430759

EST:     GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAG                         ATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCAC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 444

CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaacct ... tatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCACCGGAAGTGCTTCTAAGCTCAAGGGCCCCCTTCGTCCCCATTCTATGTAT

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 159

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 145