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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgattctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG

Basic information

species Zea mays
transcript GRMZM2G126190_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 3
gtaatgattctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttcct---tcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
||||| | ||  | |||||||             |  || ||   |||  | | ||  | | | ||| | || || || |    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
gtaataactcactcacatggt-------------tgagagttttaaaaaatattcactttattcatgaactgttgctcttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATGAAGGATATGCCCTTCCTCATGCCATCCTGCGTCTGGACCTTGCTGGGCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
-----------gtaatgattcttta-acatggtgaccaaatttcattaggacttcccaaatttttccatc--tcaattatggattgctgttcctt--cagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
             ||   |    || |||||     | |  || |||| |||   |   ||||    ||   |   |  ||   || || |  |   ||||||||||| | || |||||||||||||| |||||||| ||||| || || ||||| ||||| ||||||||||| || || ||  | ||||||||||| ||
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
-----------------gtaatgattctttaacatggtgaccaaatttcattaggact--tcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
                  ||   ||   ||  ||   | |         |  || | |  | ||  |||||    |||   |||||  |||   ||    ||||||||||| | || |||||||||||||| |||||||| || || || || ||||| ||||| ||||||||||| || || ||  | ||||||||||| ||
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatg--ttggcattaaa-cagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 3
gtaatgattctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
    |  |   | | |||  || |   |||   |      |   || ||| |||  || |    ||  ||| || ||    |||||||||| |||||||||||||||||||| || ||||| || |||||||| || || ||||| || || ||||||||||| ||| | || || ||||| ||
--gtttgtatatcaccatc-tgtcttgattcattcttttataatcacattgttctttccctga-atcaattccttttaaaacagGTATTGTATTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCTGGTCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 2
gtaatgattctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
    |  |   ||| |||  || |   |||   |      |   || ||  |||  || |    ||  ||| || |     ||||||||||||||||||||||||||||||| || ||||| || |||||||| || || ||||| || || ||||||||||| ||| | || || || || ||
--gtttgtatattaccatc-tgtcttgattcattcttttataatcacatcattctttccctga-atcaattcctttcaaaacagGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
gtaatgattctttaacatggtgaccaaatttca-ttaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
||    |||  |   |||      ||| |   | ||  | | || ||   || |    || ||| |   ||   |  |    |||||||||| ||||||||||| |||||||| || ||||| ||||||||||| || || ||||| || ||||||||||| || ||| | || |||||||| ||
gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatca--aatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
gtaatgattctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
||    | |  ||  |||  || |  ||||   |      |   || ||| ||| |||      ||  | |  | ||   ||||||||||| |||||||||||||||||||| || ||||| ||||||||||| || || ||||| || ||||||||||| || ||| | || |||||||| ||
gtttgtacttatttccatc-tgtcttaattcactcctttgtcttcacattgttctatccttga-atcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaatgattctttaacatggtgaccaaatttcattaggacttcccaa--atttttccatctcaattatggattgctgttcctt---cagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
           |||  |   |       |||  ||   |||     |  ||| ||  | || |  | || |||    | | ||   ||||||||||| |||| ||||||||||||||    ||||| |||||||||||||| ||||   | ||||||||||||||||| ||||||||||||||||| ||
----------gttagtacattttaggctttttgtttatactcattgatcattatttgaactgagctctg-attatcttccattgaacagGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGTTTCTCTCTTCCTCATGCCATCCTCCGTCTTGACCTTGCTGGACG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
----gtaatgattctttaacatg-gtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
    ||  | |    | |||||    | |  | ||  ||||   ||||  |  | | |  |  | || |  |   |  | ||    ||||||||||| | || ||||||||||||||    ||||| |||||||||||||| || ||||| ||||||||||| ||||| |||||||| ||||| || ||
gttagttcttaactctaaacatccaagtctgagttatattat--cttcttacttgtatttacttaaagt-cgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 3
--------gtaatgattctttaacatggtgaccaaatttcattaggacttcccaa--atttttccatctcaattatggattgctg--ttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
         | || | | |  |  |     || || |||  ||     ||   ||  ||| |  ||| |  || |  |     ||  || ||| ||||||||||||||||||||||||||||||    ||||| ||||| |||||||| ||||   | ||||| ||||| ||||| ||||| ||||||||||| ||
gttagttcattattaatgtcgagaaaatgaacaaagttttgttttctgtttttaatgattatgtcatattgatcacagtgaaatgattttctttagGTATTGTGTTGGACTCTGGTGATGGTGTGTCTCACACTGTGCCTATCTACGAGGGTTTCTCACTTCCACATGCTATCCTCCGTCTCGACCTTGCTGGTCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 4
----gtaatgattctttaacatggtgaccaaatttcattaggacttcccaaattt--ttccatctcaattatggattgctgttccttc-agGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
    ||| | |    ||       ||   || |||||||     || |     ||  |     || | || |   |||||  |    | |||||||||| |||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||
gttcgtattaaaatctttttggattgg--aattttcatttttcttttctgttgttagtgtagcctgagttctaacttgctcctttgactagGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 2
---------gtaatgattctttaacat-ggtgac---caaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttca---gGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
         | | |  ||| | |  || ||| ||   | | | | |||      |||     |||   || |  | |   | ||  || |   | |   |||||||| ||||| |||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| ||||| ||  | ||||||||||| ||
aaatttcaagaattttttcctcagtattggtaactgccgactatgattttcttatcctgttctttgttatatttactgaagttttttggtgtgtgaaaagGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCG

upper sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------------------------------------gtaatgat-tctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttcctt-cagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
                                                                        |   ||   | ||| |||||| ||     | |   | ||  |    || |     ||  |    |   || |||  | |  | ||||||| ||| |||||  ||| |||||||| | |||||| |||||||||||||| ||||| || || ||||| |||||  ||||  | ||| | || || ||
gtgagtgatgggagaaggggtgaggtgaatgcagcatgtgcgttggttgcgaaagtggtggaggtgtgtggagaggtggggtgtttgacatgg-gaaggtttgtgggtcggggtaagaaactgagagcagttgtggtgatgaatgcaatgcaatgcagGTATCGTGCTGGACAGTGGAGATGGTGTGACCCACACGGTGCCAATCTACGAGGGTTACGCACTGCCTCACGCCATATTGCGATTAGACTTGGCGGGTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|84977150|gb|DW475572.1|DW475572
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GGATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|29945132|gb|CB815485.1|CB815485
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGT
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGT
EST: gi|116814607|gb|EC857192.1|EC857192
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGACAAACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|28361589|gb|CB239945.1|CB239945
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTG
EST: gi|149082459|gb|EE171649.2|EE171649
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|22542569|gb|BU093007.1|BU093007
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|149106004|gb|EE291648.2|EE291648
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|148959651|gb|EC905581.2|EC905581
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|211132910|gb|FL391875.1|FL391875
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|78111213|gb|DV529610.1|DV529610
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|148991812|gb|EE033398.2|EE033398
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|211068505|gb|FL398544.1|FL398544
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACAC-GTGCCCATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|30087420|gb|CB885626.1|CB885626
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGAGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|148951113|gb|EC896784.2|EC896784
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|33091259|gb|CF051253.1|CF051253
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAG
EST: gi|211212741|gb|FL417109.1|FL417109
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|5555493|gb|AI881444.1|AI881444
EST:     TGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|149062864|gb|EE157585.2|EE157585
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|13237120|gb|BG355134.1|BG355134
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|6952494|gb|AW424562.1|AW424562
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGGGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|37361222|gb|CF602511.1|CF602511
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|148938674|gb|EC883010.2|EC883010
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|33285526|gb|CF075321.1|CF075321
EST:     TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
genomic: TGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACG
EST: gi|211266568|gb|FL402728.1|FL402728
EST:     GTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTTG                         GTATTGTGTTGGACTCTGGGTGATGGTGTCAGCCACACCGTGCCAATCTA
genomic: GTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACT-Ggtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGG-TGATGGTGTCAGCCACACCGTGCCAATCTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 135

GAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 36

GAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG


Block sizes: 49 (upstream exon), 41 (downstream exon)
Score: 34

GAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG


Block sizes: 48 (upstream exon), 44 (downstream exon)
Score: 40

GAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattc ... gttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG
                                           ctgttccttc  CT-rich tract
                aaattttt  TA-rich tract