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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTCAGATTGATAGGGAAAGACTTCGGACTGTAGGGGCTATTGAATACTTGATTGATGCCACAAGATCTGGAAATGTGTCCCGCTATATCAATCACAGgtacttgcattttatcatattttatggaaatccatcactggagcaagttgatattacaaccaatatttatttgtgcttattgcttttatagcag

Basic information

species Zea mays
transcript GRMZM2G125432_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125432_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g47900.1 (Oryza sativa), 5'ss of exon 5
CTTCTCAGATTGATAGGGAAAGACTTCGGACTGTAGGGGCTATTGAATACTTGATTGATGCCACAAGATCTGGAAATGTGTCCCGCTATATCAATCACAGgtacttgcattttatcatattt-tatggaaatccatca---ctggagcaagttgatattacaacc-aatatttatttgtgcttattgcttttatagcag-----------------------------------------
||||||||||||| ||||||||| ||| ||||  |||| ||| || |||| |||||||||||||||||| ||| || || ||||| | ||| ||||| |||||  || | | | | || | | |    ||||  || |     | ||  | |  || ||   |   ||    || ||| |   ||   |  ||  | |                                          
CTTCTCAGATTGACAGGGAAAGAGTTCAGACTACAGGGACTACTGCATACGTGATTGATGCCACAAGATATGGCAACGTATCCCGTTTTATTAATCATAGgtaactggactattttatgtctgtcccaaaatatattaacttagaagttaatatattttgggatggaaggagtacttgggaacatc-ttactacgggataaatttgttctggaaccaatgcttttgccccttcattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91051573|gb|EB161991.1|EB161991
EST:     TTGATTGATGCCACAAGATCTGGAAATGTGTCCCGCTATATCAATCACAGCAG                       
genomic: TTGATTGATGCCACAAGATCTGGAAATGTGTCCCGCTATATCAAT--CA-CAGgtacttgcat ... tttatagc