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gtaagattctttttaacatattttccaaatgtaattttatattgacttttaatttttgatatgctatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAGGCGATGGCTGCTTCTGCCATTGTGGGGGTACCAATTGCCGAGGCCGTG
species | Zea mays |
transcript | GRMZM2G125432_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGAC ATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|89106812|gb|DY577029.1|DY577029
genomic: AGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGACgtaagattct ... tatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: AGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGAC ATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|22819306|gb|BU499396.1|BU499396
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGACgtaagattct ... tatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: ATAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGAC ATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|91051573|gb|EB161991.1|EB161991
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGACgtaagattct ... tatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: AGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGAC ATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCA
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGACgtaagattct ... tatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCA
attttccaaatgtaattttatattgacttttaatttttgatatgctatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAGGCGATGGCTGCTTCTGCCATTGTGGGGGTACCAATTGCCGAGGCCGTG
ctatttttc CT-rich tract
taattttatattgact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattctttttaacatattttccaaatgtaattttatattgacttttaatttttgatatgctatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAGGCGATGGCTGCTTCTGCCATTGTGGGGGTACCAATTGCCGAGGCCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT