1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatatataatctcatcgcatatgcagattttgccacacgtagagagaccgacagcgtgttgttgattgacgatgaaataaacgggccggccgtcggcggatatgtatatgctatggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCGACAAGAGCTGCCCGGGGCTGCTCGTCTCCGTCCTGGAAGCCTTCGACG
species | Zea mays |
transcript | GRMZM2G124567_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|211389355|gb|FL471371.1|FL471371
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|211446503|gb|FK979162.1|FK979162
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCEST: gi|60400731|gb|DN233538.1|DN233538
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|211446497|gb|FK979156.1|FK979156
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|211446499|gb|FK979158.1|FK979158
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTEST: gi|76293000|gb|DV032568.1|DV032568
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCT
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|211446493|gb|FK979152.1|FK979152
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAEST: gi|78087747|gb|DV516140.1|DV516140
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGA
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|16916338|gb|BM072801.1|BM072801
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCTTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|211446502|gb|FK979161.1|FK979161
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|78087746|gb|DV516139.1|DV516139
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|211446501|gb|FK979160.1|FK979160
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGEST: gi|211446498|gb|FK979157.1|FK979157
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAG
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|71306652|gb|DR789486.1|DR789486
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|71306651|gb|DR789485.1|DR789485
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|211446500|gb|FK979159.1|FK979159
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCEST: gi|76015156|gb|DT942326.1|DT942326
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
EST: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACG GTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
genomic: TTGCCTGCGCGCAGGACGCCCTGAGACACAAGTCCTCCTCCTATCCGACGgtatatataa ... atggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCC
gacgatgaaataaacgggccggccgtcggcggatatgtatatgctatggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCGACAAGAGCTGCCCGGGGCTGCTCGTCTCCGTCCTGGAAGCCTTCGACG
gattgac putative branch site (score: 8)
atatgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatataatctcatcgcatatgcagattttgccacacgtagagagaccgacagcgtgttgttgattgacgatgaaataaacgggccggccgtcggcggatatgtatatgctatggatgcagGTGACCGTGGAAACCCTAGGAGTGCAGGGGTTCCTCGTCAACGTGTTCTCCGACAAGAGCTGCCCGGGGCTGCTCGTCTCCGTCCTGGAAGCCTTCGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG