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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctcctgctctttgaacgtcgtcgtcgcatccagatattaaatatgattcttgttcaattacatgccatggataatacaatatacacgcacgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTGCAGCAGAAGGTGGTGAGGCTGAACCAGGAGATTGCCTGCGCGCAGGACG

Basic information

species Zea mays
transcript GRMZM2G124567_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211446503|gb|FK979162.1|FK979162
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATNATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|60400731|gb|DN233538.1|DN233538
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|211446497|gb|FK979156.1|FK979156
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|211446499|gb|FK979158.1|FK979158
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATNATCRTGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|76293000|gb|DV032568.1|DV032568
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|211446493|gb|FK979152.1|FK979152
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|78087747|gb|DV516140.1|DV516140
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|211446502|gb|FK979161.1|FK979161
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|78087746|gb|DV516139.1|DV516139
EST:     ATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCGG
genomic: ATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|211446501|gb|FK979160.1|FK979160
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATNATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|211446496|gb|FK979155.1|FK979155
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATNATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|211446498|gb|FK979157.1|FK979157
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|71306652|gb|DR789486.1|DR789486
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|71306651|gb|DR789485.1|DR789485
EST:     CCATCACTCATTCCCACGCT                         TTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|211446500|gb|FK979159.1|FK979159
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATNATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
EST: gi|76015156|gb|DT942326.1|DT942326
EST:     CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCT                         CTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG
genomic: CTCTCCAGGAGAAGCTGAAGATCCTCCGCTCCATCACTCATTCCCACGCTgtataacata ... acgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcttgttcaattacatgccatggataatacaatatacacgcacgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTGCAGCAGAAGGTGGTGAGGCTGAACCAGGAGATTGCCTGCGCGCAGGACG
                           ataatacaatataca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttctcctgctctttgaacgtcgtcgtcgcatccagatattaaatatgattcttgttcaattacatgccatggataatacaatatacacgcacgcgcgcagCTGAGCAACACATCGATAATCATGGACGCGTCGGCGTACATCAAGCAGCTGCAGCAGAAGGTGGTGAGGCTGAACCAGGAGATTGCCTGCGCGCAGGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT