1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagcaatgatccgttttgtccgggcattattatttccttctagtagcgccgcgccggtgcctatttcagacgaaggcgatgatatagcatcttgttttggaaactgattcgatcggcgtgtcgtgttcgtatttcagAAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGCCAGTCGGTCATGCTGGCGGGCGGCCTCTGGGCTCCTCCTCATCAGGAGC
species | Zea mays |
transcript | GRMZM2G124540_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATGAAGGTGGACGGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAG AAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGCEST: gi|38502475|gb|CF972335.1|CF972335
genomic: TGATGAAGGTGGACGGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAGgtgagcaatg ... cgtatttcagAAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGC
EST: GGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAG AAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGCEST: gi|38502467|gb|CF972327.1|CF972327
genomic: GGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAGgtgagcaatg ... cgtatttcagAAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGC
EST: GCTTACAAACGATGAAGTGAAAAGCCATCTCCAG AAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGCEST: gi|149073771|gb|EE162085.2|EE162085
genomic: GCTTACAAACGATGAAGTGAAAAGCCATCTCCAGgtgagcaatg ... cgtatttcagAAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGC
EST: TGATGAAGGTGGACGGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAG AAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGCEST: gi|211020923|gb|FL437841.1|FL437841
genomic: TGATGAAGGTGGACGGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAGgtgagcaatg ... cgtatttcagAAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGC
EST: GACGGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAG AAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGC
genomic: GACGGGCTTACAAACGATGAAGTGAAAAGCCATCTCCAGgtgagcaatg ... cgtatttcagAAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGC
tatagcatcttgttttggaaactgattcgatcggcgtgtcgtgttcgtatttcagAAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGCCAGTCGGTCATGCTGGCGGGCGGCCTCTGGGCTCCTCCTCATCAGGAGC
aactgat putative branch site (score: 66)
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaatgatccgttttgtccgggcattattatttccttctagtagcgccgcgccggtgcctatttcagacgaaggcgatgatatagcatcttgttttggaaactgattcgatcggcgtgtcgtgttcgtatttcagAAGTACCGGCTGCACAACAGAAGATCCCCCGGCGTCGTGGCTCCGGTGAGCCAGTCGGTCATGCTGGCGGGCGGCCTCTGGGCTCCTCCTCATCAGGAGC
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