1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagaagtggtctcctgctgtcctttcatgtacttcttcctatcctacgtatatacgcgcgcgcgcgcgttgttgtggtctctcttctcggcccctggttcgctgacgcggtggtggtgcgtgcgtcgcggcctgcagTGATCGACGAATTGAAGGATGAGGCCGCCAAGAGAGGCGGAGACGCGGAGGCCAAGGCCGACGACGGCGATAAGCGGAAATGGATGAGCACCGCTCAGCT
species | Zea mays |
transcript | GRMZM2G124540_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGGTGTTCAGGCGCGAGCTCCCGCTCTGCGTGCGTCTCCTCGCCGATG TGATCGACGAATTGAAGGATGAGGCCGCCAAGAGAGGCGGAGACGCGGAGGEST: gi|88757310|gb|DY541451.1|DY541451
genomic: CGAGGTGTTCAGGCGCGAGCTCCCGCTCTGCGTGCGTCTCCTCGCCGATGgtgagaagtg ... cggcctgcagTGATCGACGAATTGAAGGATGAGGCCGCCAAGAGAGGCGGAGACGCGGAGG
EST: CGAGGTGTTCAGGCGCGAGCTCCCGCTCTGCGTGCGTCTCCTCGCCGATG TGATCGACGAATTGAAGGATGAGGCCGCCAAGAGAGGCGGAGACGCGGAGG
genomic: CGAGGTGTTCAGGCGCGAGCTCCCGCTCTGCGTGCGTCTCCTCGCCGATGgtgagaagtg ... cggcctgcagTGATCGACGAATTGAAGGATGAGGCCGCCAAGAGAGGCGGAGACGCGGAGG
cttctcggcccctggttcgctgacgcggtggtggtgcgtgcgtcgcggcctgcagTGATCGACGAATTGAAGGATGAGGCCGCCAAGAGAGGCGGAGACGCGGAGGCCAAGGCCGACGACGGCGATAAGCGGAAATGGATGAGCACCGCTCAGCT
cgctgac putative branch site (score: 14)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaagtggtctcctgctgtcctttcatgtacttcttcctatcctacgtatatacgcgcgcgcgcgcgttgttgtggtctctcttctcggcccctggttcgctgacgcggtggtggtgcgtgcgtcgcggcctgcagTGATCGACGAATTGAAGGATGAGGCCGCCAAGAGAGGCGGAGACGCGGAGGCCAAGGCCGACGACGGCGATAAGCGGAAATGGATGAGCACCGCTCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT