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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttcttccttcagctgctggcttcttattaattacgtcttggttcagtttttgtgtgatttggtattggaatttgggttgggacgaagacagta...

Basic information

species Zea mays
transcript GRMZM2G122666_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g15010.1 (Oryza sativa), 5'ss of exon 2
CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttct-------tccttcagctgctggcttcttattaattacgtcttggttcagtttttgtgtgatttggtattggaatttgggttgggacgaagacagta
 ||||| || ||| |||||||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||  | |||        | || | ||| ||   |  || ||| || |   | | ||   |  ||||| |||   | || ||||   | | | |   ||        
GACGTCGGAGGAGCTGAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgtttaccttcagttctaattctactgctcctatatctttgttacttgctgttagatttgttccttgtgcgat---ggatgggaagcagcgcttgtttgattgg----

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S7_338V6.1 (Physcomitrella patens), 5'ss of exon 2
CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttcttccttcagctgctggcttcttattaatta-cgtcttggttcagtttttgtgtgatttggtattggaatttgggttgggacgaagacagta----
 || || || ||||||||||| || |  || |||||||| ||||| ||||| || || |||||||||||| | || || |||||||| ||||| ||||||||| ||  ||  | ||  |   ||    | || | | ||| |    || |  |||    |   | | | ||   |    |   ||   || |  || | ||    
TACATCGGAGGAGTTGAGCATTGGAAAAATTAAGTTCAAAGCGTTTGACCTGGGTGGTCACCAGATCGCCAGACGAGTGTGGAAGGATTACTATGCCAAGgttaccactccccttttggactctt-tattttgtaagttagcagtgtgatggagt----ggacggtcttgttcggcccctcatgtacagaggtggatattattat

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ35155 (Selaginella moellendorffii), 5'ss of exon 2
CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgtt-gcctttc---------ttccttcagctgctg-gcttcttatt---aattacgtcttggttcagtttttgtgtgattt---ggtattggaatttgggttgggacgaagacagta-----------------------------------------------------------------------------------
 || || || ||| | ||||||  || |||||| |||||||| ||||| || ||||| ||||||||||| || ||||| |||||||||||||| ||||||||| | |  ||         ||| |||   | |   ||||    ||   |   | |  ||||   |  || | | || |||   |  | |||   || |  |||           ||                                                                                   
AACATCCGAGGAGCTAAGCATCAACAAGATCAAATTCAAGGCCTTCGATCTGGGGGGTCACCAGATCGCGCGACGCGTGTGGAAGGACTACTATGCCAAGgtttgacactcatctgagaattctttcgaatccaatgctttgcctttgaagcgatgctttggcaaaagttctttttgttttcttgccagtggtggtttgactggacgacttgttctagatctagttgctaacgatgttttgtcacaaactcgtcagatgatctgactggattccatggcttgtttactttgatcatccag

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ16976 (Selaginella moellendorffii), 5'ss of exon 2
CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttcttccttcagc--tgctggcttcttatta-attacgtcttggttcagtttttgtgtgatttggtattggaatttgggttgggacgaagacagta
 || || || ||| |||||||||||| |||||||||||| ||||| ||  | || || ||||||||||| || ||||||||||||||||||||||||||||||          |||| |   |  ||| |    | || |  ||   ||| |||  ||||| | |  || | |||   |                        
GACCTCGGAGGAGCTGAGCATCGGCAAGATCAAGTTCAAAGCGTTTGATTTGGGAGGTCACCAGATCGCTCGTCGCGTCTGGAAGGACTACTACGCCAAGgtttgtgggaaatcttctgtgttcttgggtgaaaactatagcactaattgtttctctttttttttttttggctatacaag-----------------------

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ12822 (Selaginella moellendorffii), 5'ss of exon 2
CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcct-------ttcttccttcagctgctggcttcttattaattacgtcttggttcagtttttgtgtgatttggtattggaatttgggttgggacgaagacagta
 || || || ||| ||||||| |||| |||||||||||| ||||| || || || || ||||||||||| || ||||||||||||||||||||||||||||||           |||| | |||  ||  | | || |   | |  || | | |    | ||||| | |  |||  | | |  ||    |                 
GACCTCGGAGGAGCTGAGCATAGGCAAGATCAAGTTCAAAGCGTTTGATCTGGGCGGTCACCAGATCGCTCGTCGCGTCTGGAAGGACTACTACGCCAAGgtttgtgggaaagattctcctttcttct--ttgtttttgggtgaaaac-tatagcactaatttttctctcttttt-tttggctatacaag-----------------

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ24104 (Selaginella moellendorffii), 5'ss of exon 2
CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttcttccttcagctgctggcttcttattaattacgtcttg-gttcag--tttttgtgtgatttggtattggaatttgggttgggacgaagacagta
 || || || ||| | ||||||  || |||||| |||||||| ||||| || ||||| ||||||||||| || ||||| |||||||||||||| ||||||||||         ||     | ||    | |  ||   |  || ||    |||   |  |||  ||| | | || | |   ||    |      | |   || 
AACATCCGAGGAGCTAAGCATCAACAAGATCAAATTCAAGGCCTTCGATCTGGGGGGTCACCAGATCGCGCGACGCGTGTGGAAGGACTACTATGCCAAGgttggacactcatctgagaattcttttatgtgtttgccttggttttctactcaaactccttgcttgaatcgttacttgttcttt--cttatcaaatgctcgt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211431480|gb|FL284598.1|FL284598
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211286086|gb|FL284520.1|FL284520
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTG
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTG
EST: gi|76017865|gb|DT945035.1|DT945035
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211286087|gb|FL284521.1|FL284521
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|71762580|gb|DR960517.1|DR960517
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211286090|gb|FL284524.1|FL284524
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|33103995|gb|CF063955.1|CF063955
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211284289|gb|FL284515.1|FL284515
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|33102112|gb|CF062072.1|CF062072
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211426288|gb|FL284568.1|FL284568
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211286083|gb|FL284517.1|FL284517
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211426294|gb|FL284574.1|FL284574
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211423678|gb|FL284560.1|FL284560
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211428883|gb|FL284589.1|FL284589
EST:     TTGGGGGCCACCAKATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGT
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGT
EST: gi|211426286|gb|FL284566.1|FL284566
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211423664|gb|FL284546.1|FL284546
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTAC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTAC
EST: gi|76290125|gb|DV029693.1|DV029693
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|21331607|gb|BQ486988.1|BQ486988
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211421066|gb|FL284533.1|FL284533
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211421078|gb|FL284545.1|FL284545
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|76909978|gb|DV163633.1|DV163633
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGA
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGA
EST: gi|67018413|gb|CO447162.1|CO447162
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211286094|gb|FL284528.1|FL284528
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTT
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTT
EST: gi|32864083|gb|CF003765.1|CF003765
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|76017866|gb|DT945036.1|DT945036
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211421075|gb|FL284542.1|FL284542
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|13516137|gb|BG518413.1|BG518413
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGGTGTGTACTTGGTGGATGCTGGTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|22472937|gb|BU037417.1|BU037417
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211423672|gb|FL284554.1|FL284554
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211286093|gb|FL284527.1|FL284527
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|101388933|gb|EB816448.1|EB816448
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|9953466|gb|BE640049.1|BE640049
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|71443524|gb|DR824574.1|DR824574
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|93015012|gb|EB640532.1|EB640532
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|22521424|gb|BU080235.1|BU080235
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGTATTTTCTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211423673|gb|FL284555.1|FL284555
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|22545690|gb|BU098049.1|BU098049
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|108954126|gb|EC365014.1|EC365014
EST:     TGGGGGCCACCAGATCGCCCGGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGGTGGATGCTGTTTGACAAGGAACGTTTTG
genomic: TGGGGGCCACCAGATCGCCCG-CCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGG-TGGATGCTGTT-GACAAGGAACGTTTTG
EST: gi|6403408|gb|AW171883.1|AW171883
EST:     GTCTGGAAGGGCTTCTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: GTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211431475|gb|FL284593.1|FL284593
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|13389220|gb|BG462613.1|BG462613
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GNTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAAC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAAC
EST: gi|211423667|gb|FL284549.1|FL284549
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211423674|gb|FL284556.1|FL284556
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211426284|gb|FL284564.1|FL284564
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211421072|gb|FL284539.1|FL284539
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTCGTGTACTTGGTGGATGCTGTT
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTT
EST: gi|50331557|gb|CO526683.1|CO526683
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|32866262|gb|CF005944.1|CF005944
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211431474|gb|FL284592.1|FL284592
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|33102817|gb|CF062777.1|CF062777
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|78109605|gb|DV528021.1|DV528021
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211421076|gb|FL284543.1|FL284543
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|71435920|gb|DR816970.1|DR816970
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|78109606|gb|DV528022.1|DV528022
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211426292|gb|FL284572.1|FL284572
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|76909976|gb|DV163632.1|DV163632
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|71448275|gb|DR829325.1|DR829325
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211421067|gb|FL284534.1|FL284534
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211431473|gb|FL284591.1|FL284591
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|22935537|gb|BU571812.1|BU571812
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211286088|gb|FL284522.1|FL284522
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211426287|gb|FL284567.1|FL284567
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAA
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAA
EST: gi|21432136|gb|BQ547626.1|BQ547626
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211421069|gb|FL284536.1|FL284536
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|58029440|gb|CX724867.1|CX724867
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGGACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211428880|gb|FL284586.1|FL284586
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|13515842|gb|BG518118.1|BG518118
EST:     CAGATCGCCCGCCGCGTCTGGAAGGACTGCTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: CAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211428875|gb|FL284581.1|FL284581
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|33104302|gb|CF064262.1|CF064262
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|76290124|gb|DV029692.1|DV029692
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211286084|gb|FL284518.1|FL284518
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211431478|gb|FL284596.1|FL284596
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|78105372|gb|DV523790.1|DV523790
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|21987480|gb|BQ779008.1|BQ779008
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|32908517|gb|CF013330.1|CF013330
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAGGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211421068|gb|FL284535.1|FL284535
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211284283|gb|FL284509.1|FL284509
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|67015084|gb|CO443833.1|CO443833
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
EST: gi|211284287|gb|FL284513.1|FL284513
EST:     TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAG                         GTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC
genomic: TTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 320

CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCCGAGTCGAAGAAGGAGCTTGATGCGCTTCTTGCAGATGACTCCCTTGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 173

CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCCGAGTCGAAGAAGGAGCTTGATGCGCTTCTTGCAGATGACTCCCTTGCAA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 165

CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCCGAGTCGAAGAAGGAGCTTGATGCGCTTCTTGCAGATGACTCCCTTGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 366

CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttc ... cctgtcatagGTTGATGCTGTTGTGTACTTGGTGGATGCTGTTGACAAGGAACGTTTTGCCGAGTCGAAGAAGGAGCTTGATGCGCTTCTTGCAGATGACTCCCTTGCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgttgcctttcttccttcagctgctggcttcttattaattacgtcttggttcagtttttgtgtgatttggtattggaatttgggttgggacgaagacagta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG