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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag

Basic information

species Zea mays
transcript GRMZM2G122666_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g15010.1 (Oryza sativa), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag
|||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||         | ||   |||   |  |    |  |     | | |  ||   || ||  || ||     ||  |   | |   |                    
GCTGGCCTCGCTGGGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTCAAGGACGAGgtag-----gtcgcccggatcgatcgatcgatcgagatttgtactgatttggttggttctgatttgtgttgggatttgggtgcag--------------------

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G28910.1 (Glycine max), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctg-atctggttcgattgggttcatcgcag
 ||||||||||||||| |||||||||||||||| |||||| | ||| | || ||||| || ||||| ||||||||| | || |||||||| || ||||||||   |  |   | |  | |  ||||    ||  |   ||||          ||| | |    |||    | || | |   |    ||  | |    | |    | 
TCTGGCATCGCTTGGGTTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGTCTCGATAATGCCGGAAAGACCACCTTGCTTCACATGCTCAAAGACGAGgtttccctt---ttccgcttaagccctgaatcgctttaaattt--actgggaatgttattcttttagttagaatccttttgtacaatttaaatattattacgaga-

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag
 || || ||||| |||||||||||||||||||| |||||| | ||| | |||||||| ||||| ||||| || ||| | || |||||||| || || |||||  | | | |||              ||||  |||      ||| || | ||   |||    |||       |    ||  |||||     |            
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttt-----------tttttttttgttt-ccccaatcgtttaccttttttttttattattattataagagttggttttgcag------------

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA03G39110.2 (Glycine max), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgt-cctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgat-tgggttcatcgcag
 || || |||||||| ||||||||||||||||| |||||| | ||| | |||||||| ||||| ||||| |||||| | || |||||||| || || ||||| |||||  |  | |     ||     |||   |  | ||||   || | ||||  |||   |||    ||  |   | ||   | | ||| ||   | ||     
TCTAGCGTCGCTTGGCCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACCACCTTGCTTCACATGCTCAAAGATGAGgttcctcttcaatttcttttcccttttttttgtttccccaatt---gtttaatattgttttttctt--ttggattcgttaatagtggtggatctgcccttatttg--

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA20G38360.1 (Glycine max), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcga-ttgggttcatcgcag
 ||||||||||||||  |||||||||||||||| |||||| | ||| | || ||||| || ||||| ||||||||| | || |||||||| || ||||||||   |  | ||       | |  |   ||||  |||   |||   ||  | | ||||  | | | |   |  ||    || |  |  || |    ||| |     
TCTGGCATCGCTTGGATTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGTCTCGATAATGCCGGAAAGACCACCTTGCTTCACATGCTCAAAGACGAGgtttccctttcccatccttttccgcttatttctctgctccttct--tcacaaacgcttaagccctgaatcgattt--aaatttactgggaatcttattcgttta--

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccag-tcttatatgc---tttcgacttaacggggattcctgatctggttcgattgggttcatcgcag
||| ||  |  | ||| | |||||||||||||| || ||| | ||||| ||| | ||||||||||||||||||||  | || |||||||| ||||| |||||     || | |  |    |        ||      | |   | | | | ||   |   ||  ||||   | ||| || ||  | |   | | |    |||       
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgttta--ttgttaaatttc-------

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S7_338V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag-
||| ||  |  | ||||| |||||||||||||| || ||||| ||||| ||| | || ||||| |||||||||||  | || |||||||| ||||| |||||     ||  ||     | | ||             | |    ||        ||     | |||     |  |  |||  | |||   |  | |   | |    
GCTTGCGACCTTAGGGCTATGGCAGAAGGAGGCGAAAATCCTGTTCCTCGGCTTGGATAACGCGGGCAAGACCACGTTGCTACACATGCTCAAGGATGAGgtaagggctggctt----accagctagaaggaagaaaggaaggaaggaaggagggcagggaatttataaacggct--tgagatagtttcgtgtgctgtgttgtttc

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S10_357V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcct-ctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgat--tgggttcatcgcag
 || ||     | |||||||||||||||||||| || ||||| || || || |||||||| || |||||||| || || || |||||||| ||||| |||||    ||||   | |    |     |||   | | |  |||| || | |     | |     | || |     |||       |  |||||   |  | | |     
TCTTGCGAGCATAGGGCTGTGGCAGAAGGAGGCCAAAATCCTGTTTCTGGGTCTCGACAATGCTGGCAAGACTACTCTTCTGCACATGCTCAAGGATGAGgttagactctcttttctgttttgattcct--gcttggtcaatttcaat-tcgcg-gttgatagcgtaccaaattttcgcctctagaatcgataacgtatccgtt----

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S44_58V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag
 || ||     | ||  |||||||||||||||| || ||| | ||||| || || ||||| ||||| ||||| || || || |||||||| ||||| ||||||||| |     | ||  ||  | ||||||  ||     ||||     | | ||| |           |  ||  | | |   ||     ||| |||       
TCTTGCGAGCATAGGTTTGTGGCAGAAGGAGGCCAAAATCTTGTTCCTGGGTCTTGACAATGCCGGGAAGACGACACTTCTGCACATGCTCAAGGATGAGgtcctccccttgccagatttcttctccttttttttcttttttcccacggtttgtgcctggctgccgctagaaatgtcggtttctgtcttcatggcttctg-----

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ35155 (Selaginella moellendorffii), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcc----tctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag
| ||||  |||| |||||||||||||||||||| ||||| |||||||| || |||||||| || || || || || || ||||||||||| |||||||||||      | || | ||    |    || || |  | ||  ||   |   |||     ||  ||   ||        || ||  | |  ||   | |   |  |  |||
GTTGGCCACGCTCGGGCTGTGGCAGAAGGAGGCCAAGATTCTCTTCCTAGGTCTCGACAATGCGGGGAAAACAACGCTTCTCCACATGCTCAAGGACGAGgtgagtggtttccagcttaccctagagctccatcgcgttctgaggccgcctctctcgcgcgctc--ttttggttttttttctttttttcttttctcgcaattcttccag

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ16976 (Selaginella moellendorffii), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag
  | ||    || |||||||||||||||||||  |||||| | ||||| || |||||||||||||||||||| || || || |||||||| |||||||||||   |         |  ||   | ||| |   |   | ||    |  ||         |                                             
CTTAGCGAGCCTAGGGCTGTGGCAGAAGGAGGGCAAGATCTTGTTCCTAGGGCTCGACAACGCCGGCAAGACGACGCTGCTACACATGCTCAAGGACGAGgtaagcgaatttcttggaatttcctcctctaggtcatggatctggggattgcgcctgcgcag-------------------------------------------

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ12822 (Selaginella moellendorffii), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag
  | ||    || |||||||||||||||||||  |||||| | ||||| || |||||||||||||||||||| || || || |||||||| |||||||||||   |         |  ||   | ||  |   |   | ||    |  ||         |                                             
CTTAGCGAGCCTAGGGCTGTGGCAGAAGGAGGGCAAGATCTTGTTCCTAGGGCTCGACAACGCCGGCAAGACGACGCTGCTACACATGCTCAAGGACGAGgtaagcgaatttcttggaatttcctcccctaggtcatggatctggggattgcgcctgcgcag-------------------------------------------

upper sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ24104 (Selaginella moellendorffii), 5'ss of exon 1
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag
| ||||  |||| |||||||||||||||||||| ||||| |||||||| || |||||||| || || || || || || ||||||||||| |||||||||||          |||  | | | |    | ||| | ||  |||          |   ||   |        | ||  |  | |  ||   | |   |  |  |||
GTTGGCCACGCTCGGGCTGTGGCAGAAGGAGGCCAAGATTCTCTTCCTAGGTCTCGACAATGCGGGGAAAACAACGCTTCTCCACATGCTCAAGGACGAGgtgagt--ggtttccagcttaccctagatctccat-cgcgttctgaggccgcctctcttgcgcgctcttttggttttttgttttcttttctcgcaattcttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211431480|gb|FL284598.1|FL284598
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211286086|gb|FL284520.1|FL284520
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211286087|gb|FL284521.1|FL284521
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211286090|gb|FL284524.1|FL284524
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCA-KACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211284289|gb|FL284515.1|FL284515
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211426288|gb|FL284568.1|FL284568
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211286083|gb|FL284517.1|FL284517
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211426294|gb|FL284574.1|FL284574
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211423678|gb|FL284560.1|FL284560
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211428883|gb|FL284589.1|FL284589
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211426291|gb|FL284571.1|FL284571
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211426286|gb|FL284566.1|FL284566
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211423664|gb|FL284546.1|FL284546
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|76290125|gb|DV029693.1|DV029693
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|21331607|gb|BQ486988.1|BQ486988
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAATACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211421066|gb|FL284533.1|FL284533
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211421078|gb|FL284545.1|FL284545
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|76909978|gb|DV163633.1|DV163633
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|67018413|gb|CO447162.1|CO447162
EST:     ACCACTCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: ACCAC-CCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211286094|gb|FL284528.1|FL284528
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|32864083|gb|CF003765.1|CF003765
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|76017866|gb|DT945036.1|DT945036
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211421075|gb|FL284542.1|FL284542
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|13516137|gb|BG518413.1|BG518413
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|22472937|gb|BU037417.1|BU037417
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAATACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211423672|gb|FL284554.1|FL284554
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211286093|gb|FL284527.1|FL284527
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|101388933|gb|EB816448.1|EB816448
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|9953466|gb|BE640049.1|BE640049
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAATACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|71443524|gb|DR824574.1|DR824574
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|93015012|gb|EB640532.1|EB640532
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|22521424|gb|BU080235.1|BU080235
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAATACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|18660939|gb|BM501128.1|BM501128
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211423673|gb|FL284555.1|FL284555
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|22545690|gb|BU098049.1|BU098049
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAATACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|108954126|gb|EC365014.1|EC365014
EST:     GCCTCGACAACGCCGGGAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211428872|gb|FL284578.1|FL284578
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211431475|gb|FL284593.1|FL284593
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211286092|gb|FL284526.1|FL284526
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCA
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCA
EST: gi|211428876|gb|FL284582.1|FL284582
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAG
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAG
EST: gi|13389220|gb|BG462613.1|BG462613
EST:     GACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211423667|gb|FL284549.1|FL284549
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211423674|gb|FL284556.1|FL284556
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211426284|gb|FL284564.1|FL284564
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211421072|gb|FL284539.1|FL284539
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|50331557|gb|CO526683.1|CO526683
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|32866262|gb|CF005944.1|CF005944
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211431474|gb|FL284592.1|FL284592
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|78109605|gb|DV528021.1|DV528021
EST:     AACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: AACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211421076|gb|FL284543.1|FL284543
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|71435920|gb|DR816970.1|DR816970
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|78109606|gb|DV528022.1|DV528022
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211426292|gb|FL284572.1|FL284572
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|71448275|gb|DR829325.1|DR829325
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211421067|gb|FL284534.1|FL284534
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211431473|gb|FL284591.1|FL284591
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|22935537|gb|BU571812.1|BU571812
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAATACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211286088|gb|FL284522.1|FL284522
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211426287|gb|FL284567.1|FL284567
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|21432136|gb|BQ547626.1|BQ547626
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAATACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211421069|gb|FL284536.1|FL284536
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|58029440|gb|CX724867.1|CX724867
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211428880|gb|FL284586.1|FL284586
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211428875|gb|FL284581.1|FL284581
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|33104302|gb|CF064262.1|CF064262
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|76290124|gb|DV029692.1|DV029692
EST:     CCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: CCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211286084|gb|FL284518.1|FL284518
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211431478|gb|FL284596.1|FL284596
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|78105372|gb|DV523790.1|DV523790
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|21987480|gb|BQ779008.1|BQ779008
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAATACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|32908517|gb|CF013330.1|CF013330
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211421068|gb|FL284535.1|FL284535
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAATACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211284283|gb|FL284509.1|FL284509
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|91878887|gb|EB408844.1|EB408844
EST:     CCTCGACCAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: CCTCGAC-AACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|67015084|gb|CO443833.1|CO443833
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC
EST: gi|211284287|gb|FL284513.1|FL284513
EST:     GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAG                         CGGCTCGTACAGCACCAGCCAACGCAGTACCCCACGTCAGAAGAGTTGAGC
genomic: GCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 406

GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 418

GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 581

GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 398

GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctcta ... ttcatcgcagCGGCTCGTACAGCACCAGCCGACGCAGTACCCCACGTCAGAAGAGTTGAGCATCGGCAGGATCAAGTTCAAGGCGTTCGACCTTGGGGGCCACCAGATCG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG