1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGGTGGCGCCGGCGCTGGCCGCCGGCTGCGCCCTGGTCGTCAAGCCCGCCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgcatatcgcattcgcattcgcattcgcatattcaacgacgagctgctttttttagctgttccccggcgccccgttctgaacagaacgcttaataactgactgatcctccggtctcgcag
species | Zea mays |
transcript | GRMZM2G122172_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACGEST: gi|148942564|gb|EC887583.2|EC887583
genomic: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
EST: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACGEST: gi|148948770|gb|EC894171.2|EC894171
genomic: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
EST: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGEST: gi|149087183|gb|EE176720.2|EE176720
genomic: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTG
EST: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAN GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGGCAGGCTTCGGCCCGACGEST: gi|149087182|gb|EE176719.2|EE176719
genomic: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
EST: CGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACGEST: gi|78074898|gb|DV503332.1|DV503332
genomic: CGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
EST: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACGEST: gi|149009496|gb|EE041490.2|EE041490
genomic: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
EST: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCEST: gi|148959027|gb|EC905199.2|EC905199
genomic: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCC
EST: GCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACGEST: gi|148948769|gb|EC894170.2|EC894170
genomic: GCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
EST: CGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACGEST: gi|78091392|gb|DV519766.1|DV519766
genomic: CGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
EST: CAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGACTTCGGCCCGACGEST: gi|148993481|gb|EE033800.2|EE033800
genomic: CAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
EST: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACGEST: gi|71426117|gb|DR807167.1|DR807167
genomic: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
EST: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAG GCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
genomic: CCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgca ... ggtctcgcagGCAGGGGTCCCAGACGGCGTGATCAACGTCGTGCCAGGCTTCGGCCCGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGTGGCGCCGGCGCTGGCCGCCGGCTGCGCCCTGGTCGTCAAGCCCGCCGAGCAGACGCCGCTCAGCGCCCTGTACCTCGCGCAGCTCGCCAAGCAGgttgcatgcatatcgcattcgcattcgcattcgcatattcaacgacgagctgctttttttagctgttccccggcgccccgttctgaacagaacgcttaataactgactgatcctccggtctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC