1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgatgctcctcgacccctctgtagtctgtacacgtactacgcaactgccttggtagttagtgtggccgatgatgactattgactagcgacgacgtgggcaacgcaacattaactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGGACGAGCTGGCGGCCCTGGAGAGCCTGGACGCCGGCAAGCACCCGGCCG
species | Zea mays |
transcript | GRMZM2G122172_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGEST: gi|148948770|gb|EC894171.2|EC894171
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGEST: gi|149087183|gb|EE176720.2|EE176720
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGEST: gi|76020437|gb|DT947607.1|DT947607
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
EST: CAGCCAGGGCCGCTTTCCACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCCGACCTGGTGGAGGAGCGCGCEST: gi|149009496|gb|EE041490.2|EE041490
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCC-GACCTGGTGGAGGAGCGCGC
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGEST: gi|148959028|gb|EE010537.2|EE010537
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGEST: gi|94478183|gb|EB707141.1|EB707141
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGEST: gi|211099338|gb|FL362938.1|FL362938
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGRGCGGATCATGGCGAAGGCTGGCCGACCTGGTGGAEST: gi|148942565|gb|EC887584.2|EC887584
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGA-GGCTGGCCGACCTGGTGGA
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGEST: gi|148993481|gb|EE033800.2|EE033800
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGEST: gi|71317748|gb|DR795633.1|DR795633
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
EST: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCC GAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
genomic: CAGCCAGGGCCGCTTTCGACCACGGCGAGTGGCCACGCATGTCTGGATCCgtacgatgct ... taactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCG
gccgatgatgactattgactagcgacgacgtgggcaacgcaacattaactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGGACGAGCTGGCGGCCCTGGAGAGCCTGGACGCCGGCAAGCACCCGGCCG
cattaac putative branch site (score: 2)
aacattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatgctcctcgacccctctgtagtctgtacacgtactacgcaactgccttggtagttagtgtggccgatgatgactattgactagcgacgacgtgggcaacgcaacattaactggcagGAACGGGGGCGGATCATGGCGAGGCTGGCCGACCTGGTGGAGGAGCGCGCGGACGAGCTGGCGGCCCTGGAGAGCCTGGACGCCGGCAAGCACCCGGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA