1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cctatagcttatgttttgatctacatgctcactaaatatatttgatatcttttcagcgacaagaaaattataaccaagtgcaattgtttttttgaagcagATGCATTACATCAAGAAAAAGATTTAGTGAAACTGTTTAGAAAGCTATT
species | Zea mays |
transcript | GRMZM2G122160_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTCATCAGCTTGGCCGCTGCTAAGAAGCCTGCTCGCACAAATGCTTCTG ATGCATTACATCAAGAAAAAGATTTAGTGAAACTGTTTAGAAAGCTATTEST: gi|211287097|gb|FL450216.1|FL450216
genomic: GGTCATCAGCTTGGCCGCTGCTAAGAAGCCTGCTCGCACAAATGCTTCTGgtataaacac ... tttgaagcagATGCATTACATCAAGAAAAAGATTTAGTGAAACTGTTTAGAAAGCTATT
EST: GGTCATCAGCTTGGCCGCTGCTAAGAAGCCTGCTCGCACAAATGCTTCTG ATGCATTACATCAAGAAAAAGATTTAGTGAAACTGTTTAGAAAGCTATTEST: gi|211534277|gb|FL432968.1|FL432968
genomic: GGTCATCAGCTTGGCCGCTGCTAAGAAGCCTGCTCGCACAAATGCTTCTGgtataaacac ... tttgaagcagATGCATTACATCAAGAAAAAGATTTAGTGAAACTGTTTAGAAAGCTATT
EST: GGTCATCAGCTTGGCCGCTGCTAAGAAGCCTGCTCGCACAAATGCTTCTG ATGCATTACATCAAGAAAAAGATTTAGTGAAACTGTTTAGAAAGCTATT
genomic: GGTCATCAGCTTGGCCGCTGCTAAGAAGCCTGCTCGCACAAATGCTTCTGgtataaacac ... tttgaagcagATGCATTACATCAAGAAAAAGATTTAGTGAAACTGTTTAGAAAGCTATT
tatcttttcagcgacaagaaaattataaccaagtgcaattgtttttttgaagcagATGCATTACATCAAGAAAAAGATTTAGTGAAACTGTTTAGAAAGCTATT
ttataac putative branch site (score: 2)
ttgttttttt putative PPT
acaagaaaattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctatagcttatgttttgatctacatgctcactaaatatatttgatatcttttcagcgacaagaaaattataaccaagtgcaattgtttttttgaagcagATGCATTACATCAAGAAAAAGATTTAGTGAAACTGTTTAGAAAGCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA