1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaacaggaaaaaaaaacagagtggataattgattggctaagctgaagtagcctactacatgcactgttccttagtgttcttctctgtaatatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGGCGGGAAGGTGCTGGTATTTGACGATTTCCCCGCCGACAAGGCAAAGGAT
species | Zea mays |
transcript | GRMZM2G122160_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCATCAAGGATGCTGCTGCCCCTAG GGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGGEST: gi|9794332|gb|BE552640.1|BE552640
genomic: CAGCATCAAGGATGCTGCTGCCCCTAGgtgcgtacca ... tatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGG
EST: CTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAG GGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGG
genomic: CTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAGgtgcgtacca ... tatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGG
aagtagcctactacatgcactgttccttagtgttcttctctgtaatatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGGCGGGAAGGTGCTGGTATTTGACGATTTCCCCGCCGACAAGGCAAAGGAT
tgtaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaacaggaaaaaaaaacagagtggataattgattggctaagctgaagtagcctactacatgcactgttccttagtgttcttctctgtaatatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGGCGGGAAGGTGCTGGTATTTGACGATTTCCCCGCCGACAAGGCAAAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG