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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGACGCACGCGGACGCCTCCGTTCGTACTCCCGCCGCCTGTAGAGGCCTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctacgcggcgcaacttctccggtcccatcggttttgggtgcgcgaccctccttcggcttctcatcgtcgttcttcggtgcgcggacgcaattca...

Basic information

species Zea mays
transcript GRMZM2G115939_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211132803|gb|FL366559.1|FL366559
EST:     AAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: AAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|211373002|gb|FL342998.1|FL342998
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|211259767|gb|FL311710.1|FL311710
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|211398788|gb|FL318386.1|FL318386
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAAGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|24462527|gb|BM660058.1|BM660058
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACAGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|211350032|gb|FL354315.1|FL354315
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|211021365|gb|FL343612.1|FL343612
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|211162273|gb|FL345451.1|FL345451
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAGGCSGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|211505256|gb|FL326165.1|FL326165
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAAGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|211472923|gb|FL342170.1|FL342170
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: gi|211118985|gb|FL350356.1|FL350356
EST:     CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG                         GTMTCTTAGTGCAAGNAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG