1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctcctcctccactgccttcctgtttttaaacagggagaggggtggccctccgctagccgcacggatcctctccatcctcaccgtttcttcctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG
species | Zea mays |
transcript | GRMZM2G115939_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211373002|gb|FL342998.1|FL342998
genomic: AAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211259767|gb|FL311710.1|FL311710
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211398788|gb|FL318386.1|FL318386
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAAGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|24462527|gb|BM660058.1|BM660058
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACAGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211350032|gb|FL354315.1|FL354315
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211021365|gb|FL343612.1|FL343612
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211162273|gb|FL345451.1|FL345451
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCSGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211505256|gb|FL326165.1|FL326165
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAAGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211472923|gb|FL342170.1|FL342170
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211118985|gb|FL350356.1|FL350356
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTMTCTTAGTGCAAGNAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
ccctccgctagccgcacggatcctctccatcctcaccgtttcttcctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG
tcctcac putative branch site (score: 2)
tcctctccatcctcac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctcctccactgccttcctgtttttaaacagggagaggggtggccctccgctagccgcacggatcctctccatcctcaccgtttcttcctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC