1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatcctacagtttaaacaacattattttttatctaactattttctgtattatgattgctctgaccttaacaaatcgtccagCTCTTTTTTATGGCCATGTTCTTCTCCACTGTACGCACCGGCAAGGTGAATGAGTTGAGAAATTTATGGCACTGCGGGTGGTGGCCAGTGAAGATTGCCC
species | Zea mays |
transcript | GRMZM2G114001_T02 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GGGGTTGTCTCGCGGCTGAAAGCGTGCTCGTGGCGAGCCATGCATTCTTT CTCTTTTTTATGGCCATGTTCTTCTCCACTGTACGCACCGGCAAGGTGAATEST: gi|211204798|gb|FL181899.1|FL181899
genomic: GGGGTTGTCTCGCGGCTGAAAGCGTGCTCGTGGCGAGCCATGCATTCTTTgtatcctaca ... aatcgtccagCTCTTTTTTATGGCCATGTTCTTCTCCACTGTACGCACCGGCAAGGTGAAT
EST: GGGTTGTCTCGCGNCTGAAAGCGTGCTCGTGCTCGAGCCATGCATTCTTT CTCTTTTT-ATGGGCATGGTCTTTCTC-ACTGTACGCACCGGCAAGGEST: gi|149081895|gb|EE171057.2|EE171057
genomic: GGGTTGTCTCGCGGCTGAAAGCGTGCTCGTGG-CGAGCCATGCATTCTTTgtatcctaca ... aatcgtccagCTCTTTTTTATGGCCATGTTCTT-CTCCACTGTACGCACCGGCAAGG
EST: GGGGTTGTCTCGCGGCTGAAAGCGTGCTCGTGGCGAGCCATGCATTCTTT CTCTTTTTTATG
genomic: GGGGTTGTCTCGCGGCTGAAAGCGTGCTCGTGGCGAGCCATGCATTCTTTgtatcctaca ... aatcgtccagCTCTTTTTTATG
ttttatctaactattttctgtattatgattgctctgaccttaacaaatcgtccagCTCTTTTTTATGGCCATGTTCTTCTCCACTGTACGCACCGGCAAGGTGAATGAGTTGAGAAATTTATGGCACTGCGGGTGGTGGCCAGTGAAGATTGCCC
gaccttaac putative branch site
tattttctgtattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctacagtttaaacaacattattttttatctaactattttctgtattatgattgctctgaccttaacaaatcgtccagCTCTTTTTTATGGCCATGTTCTTCTCCACTGTACGCACCGGCAAGGTGAATGAGTTGAGAAATTTATGGCACTGCGGGTGGTGGCCAGTGAAGATTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA