Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaccatatgtattaccccaatcgcctgctccggcggacggcagcgcagcggcggtgaccgggcttcagttttatgccggccggctccgccaccaatcctaattctctaaaatatagcaatactgtgaataatgaaatatatatatccgctgcagGCAGCCAAGCTAGCGAAGCACGGACGACAATAATGAACTGTGTCTTCTCCTGCCAGGGCCTCAGCCCTATGAACGTCAGATACCTGTATGCGGCTATCTT

Basic information

species Zea mays
transcript GRMZM2G114001_T02
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149095378|gb|EE181016.2|EE181016
EST:     GCCCGTTGTGTTGGAGAGGTCTTCTCCACGTTCAGTCCATCTCTCTGCAG                         GCAGCCAAGCTAGCGAAGCACGGACGACAATAATGAACTGTGTCTTCTCCT
genomic: GCCCGTTGTGTTGGAGAGGTCTTCTCCACGTTCAGTCCATCTCTCTGCAGgtgagcacca ... tccgctgcagGCAGCCAAGCTAGCGAAGCACGGACGACAATAATGAACTGTGTCTTCTCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattctctaaaatatagcaatactgtgaataatgaaatatatatatccgctgcagGCAGCCAAGCTAGCGAAGCACGGACGACAATAATGAACTGTGTCTTCTCCTGCCAGGGCCTCAGCCCTATGAACGTCAGATACCTGTATGCGGCTATCTT
                  aatactgtgaataatg  TA-rich tract