1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCGCGGTATGGATCCCATGAACGTAGACAACGGCGGCTGCGGCGGCCTTGACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatccagtccagctatacccccgttccattcgggtttccagttcgctggtttgtatttcgcggtgtgatctgccgaatgataagactgcctttgat...
species | Zea mays |
transcript | GRMZM2G112793_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|22490124|gb|BU050047.1|BU050047
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGTTATTGATGGAGGAAAGCAACEST: gi|211046221|gb|FL204514.1|FL204514
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|211043271|gb|FL204511.1|FL204511
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|211046223|gb|FL204516.1|FL204516
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|211046224|gb|FL204517.1|FL204517
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|211043272|gb|FL204512.1|FL204512
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|78118757|gb|DV537141.1|DV537141
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|26559743|gb|CA831978.1|CA831978
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|211043270|gb|FL204510.1|FL204510
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|211046225|gb|FL204518.1|FL204518
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|18655213|gb|BM500018.1|BM500018
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGCAGGAAAGCAAEST: gi|6021718|gb|AW066646.1|AW066646
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGG-AGGAAAGCAA
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|31360213|gb|CD444570.1|CD444570
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGAGGGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|211043273|gb|FL204513.1|FL204513
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCGGTGCCGCCCGCTCGCCGAGCAGGAC GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|26557712|gb|CA829947.1|CA829947
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGTCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAEST: gi|87153205|gb|DY397994.1|DY397994
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTG-CGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAA
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|22541924|gb|BU092362.1|BU092362
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: CGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAACEST: gi|211046226|gb|FL204519.1|FL204519
genomic: CGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
EST: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAG GTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
genomic: ACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatcca ... catatttcagGTTAAGGCCCTGTGCGAGAAGGCCAAGGAGATATTGATGGAGGAAAGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCGGTATGGATCCCATGAACGTAGACAACGGCGGCTGCGGCGGCCTTGACGCGCAGATCGAGCAGCTGATGCAGTGCCGCCCGCTCGCCGAGCAGGAGgtgagatccagtccagctatacccccgttccattcgggtttccagttcgctggtttgtatttcgcggtgtgatctgccgaatgataagactgcctttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccgt