1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gagccgccagcactgggtctattattttcttacctcacatatatatgcactatacttttatccatgtgacatttttttggtatactcccctttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCATTGGCAAGCCAATGAATCAGAGACCTAG
species | Zea mays |
transcript | GRMZM2G111614_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAG GTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCAEST: gi|211263166|gb|FL356033.1|FL356033
genomic: TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAGgtatgaaagc ... tttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCA
EST: TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAG GTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCA
genomic: TTTTATACAGTTGGCTATCCGGACAAATCTAATGTTCTTCTATTTTGAAGgtatgaaagc ... tttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCA
tgcactatacttttatccatgtgacatttttttggtatactcccctttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCATTGGCAAGCCAATGAATCAGAGACCTAG
tactcccctttgtt CT-rich tract
atttttttggtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagccgccagcactgggtctattattttcttacctcacatatatatgcactatacttttatccatgtgacatttttttggtatactcccctttgttgcagGTCTGTATTATCATTTGCCAAAGCGAGCAGCTGGTATTCGCTATGTATTCATTGGCAAGCCAATGAATCAGAGACCTAG
- - -gccagca
- - - - - - - - - - - - - - - - cctcaca
- - - - - - - - - - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttggt