1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctttgacaaataaaatttgagtatttggctatctttgtaggcttgtagcacactactttggataattgtatgatactccattaacgaagctag...
species | Zea mays |
transcript | GRMZM2G111614_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATEST: gi|78027265|gb|DV495652.1|DV495652
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: CAGTGACATCCGCAGTGGTAAAGCTGCAGGATATAGCTTCTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATEST: gi|211263166|gb|FL356033.1|FL356033
genomic: CAGTGACATCCGCAGTGGTAAAGCTGCA-GATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATEST: gi|78111108|gb|DV529505.1|DV529505
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATEST: gi|78026036|gb|DV494423.1|DV494423
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: TCAGTGACATCCGCAGTGGAAAAGCTGCAGATATAGCTTCTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATEST: gi|94474488|gb|EB703446.1|EB703446
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTTTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATEST: gi|78025723|gb|DV494110.1|DV494110
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATEST: gi|78104551|gb|DV522969.1|DV522969
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATEST: gi|78026496|gb|DV494883.1|DV494883
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAATEST: gi|78081930|gb|DV510342.1|DV510342
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
EST: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAG ACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
genomic: TCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctt ... taatgttcagACCTCCAATGGCAAGAGCAAATGCACCCTTTGTCTCAGCATCCGGCAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGGGGCATCCCTGTTCTAAATGAAGATGGAAATATCATCAGTGACATCCGCAGTGGTAAAGCTGCAGATATAGCTTCTCATTCAGAGgtatttgctttgacaaataaaatttgagtatttggctatctttgtaggcttgtagcacactactttggataattgtatgatactccattaacgaagctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaaa