1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcttgtgttgtgggtttctgttcttaattacatgtgatcaataccacatcacacggctactgatcattaataatgttgtttggatcggaataatgaacagGTGGGCGTTGTCCATGGCAACCCAGTCGACGATGACAAGGAACAGCGGGCGCGGTACCTCAAATACTCGCAGAAGGCGCTCGGCTTCGCCGTCTGCACGT
species | Zea mays |
transcript | GRMZM2G109515_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTCAGCAGCGGATGTTGTAATGGACGTCATATCACCGAAAACCACTCAG GTGGGCGTTGTCCATGGCAACCCAGTCGACGATGACAAGGAACAGCGGGCGEST: gi|22490196|gb|BU050119.1|BU050119
genomic: ATTCAGCAGCGGAGGTTGTAATGGACGTCATATCACCGAAAACCACTCAGgtttgttttt ... taatgaacagGTGGGCGTTGTCCATGGCAACCCAGTCGACGATGACAAGGAACAGCGGGCG
EST: ATTCAGCAGCGGATGTTGTAATGGACGTCATATCACCGAAAACCACTCAG GTGGGCGTTGTCCATGGCAACCCAGTCGACGATGACAAGGAACAGCGGGCG
genomic: ATTCAGCAGCGGAGGTTGTAATGGACGTCATATCACCGAAAACCACTCAGgtttgttttt ... taatgaacagGTGGGCGTTGTCCATGGCAACCCAGTCGACGATGACAAGGAACAGCGGGCG
acatcacacggctactgatcattaataatgttgtttggatcggaataatgaacagGTGGGCGTTGTCCATGGCAACCCAGTCGACGATGACAAGGAACAGCGGGCGCGGTACCTCAAATACTCGCAGAAGGCGCTCGGCTTCGCCGTCTGCACGT
attaataatgttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgtgttgtgggtttctgttcttaattacatgtgatcaataccacatcacacggctactgatcattaataatgttgtttggatcggaataatgaacagGTGGGCGTTGTCCATGGCAACCCAGTCGACGATGACAAGGAACAGCGGGCGCGGTACCTCAAATACTCGCAGAAGGCGCTCGGCTTCGCCGTCTGCACGT
- -tgtgttg
- - - - - - - -ttctgtt
- - - - - - - - - - - - - - - catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt