1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tactatcgatttcccttccaaagttggcaaaagaaatttatgcccgtgaaccttcggtgaattgattcattgattgattgataatataataataatgcagGTATCAACGCAGGTACAACAGCCCTCGCTACCTCCGCAACAGCCTGACGAGGTCGGAACCAAAAATTCAGCAGCGGAGGTTGTAATGGACGTCATATCAC
species | Zea mays |
transcript | GRMZM2G109515_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAGCGTGGTACTCAAGAGTCCACACCGAAAGACCGCTGTTGCAGCTCAG GTATCAACGCAGGTACAACAGCCCTCGCTACCTCCGCAACAGCCTGACGAGEST: gi|22490196|gb|BU050119.1|BU050119
genomic: CCAGCGTGGTACTCAAGAGTCCACACCGAAAGACCGCTGTTGCAGCTCAGgttagctatt ... aataatgcagGTATCAACGCAGGTACAACAGCCCTCGCTACCTCCGCAACAGCCTGACGAG
EST: CCAGCGTGGTACTCAAGAGTCCACACCGAAAGACCGCTGTTGCAGCTCAG GTATCAACGCAGGTACAACAGCCCTCGCTACCTCCGCAACAGCCTGACGAG
genomic: CCAGCGTGGTACTCAAGAGTCCACACCGAAAGACCGCTGTTGCAGCTCAGgttagctatt ... aataatgcagGTATCAACGCAGGTACAACAGCCCTCGCTACCTCCGCAACAGCCTGACGAG
gtgaaccttcggtgaattgattcattgattgattgataatataataataatgcagGTATCAACGCAGGTACAACAGCCCTCGCTACCTCCGCAACAGCCTGACGAGGTCGGAACCAAAAATTCAGCAGCGGAGGTTGTAATGGACGTCATATCAC
gattgat putative branch site (score: 6)
aattgattcattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactatcgatttcccttccaaagttggcaaaagaaatttatgcccgtgaaccttcggtgaattgattcattgattgattgataatataataataatgcagGTATCAACGCAGGTACAACAGCCCTCGCTACCTCCGCAACAGCCTGACGAGGTCGGAACCAAAAATTCAGCAGCGGAGGTTGTAATGGACGTCATATCAC
- - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - -atgcccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg