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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCTGGAAATGGTGCGTGTGTTGAAGGTGCCTACAGTTCTTCTTGTCACTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttgactattgtattgaagttaggtgaaaacattatttgcctttattcaagtctcaaggctcttgccatggaaataataattgtctatttctgc...

Basic information

species Zea mays
transcript GRMZM2G106412_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156106|gb|DY400895.1|DY400895
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|60399238|gb|DN232052.1|DN232052
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|87151655|gb|DY396444.1|DY396444
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|211285140|gb|FL449083.1|FL449083
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|71762470|gb|DR960407.1|DR960407
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|83278183|gb|DV942191.1|DV942191
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGTTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|78117881|gb|DV536268.1|DV536268
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|148953733|gb|EC899099.2|EC899099
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|76912229|gb|DV164624.1|DV164624
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|113598156|gb|DW767750.1|DW767750
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAG
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAG
EST: gi|33092519|gb|CF052513.1|CF052513
EST:     CTTCTGATGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|78120538|gb|DV538922.1|DV538922
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: gi|211170553|gb|FL456917.1|FL456917
EST:     CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG                         GTACTGCAAAGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCTGGAAATGGTGCGTGTGTTGAAGGTGCCTACAGTTCTTCTTGTCACTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttgactattgtattgaagttaggtgaaaacattatttgcctttattcaagtctcaaggctcttgccatggaaataataattgtctatttctgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT