Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60399238|gb|DN232052.1|DN232052EST: GAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: GAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST:
gi|19436497|gb|BM952907.1|BM952907EST: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG GTGACCATTTTTGGTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST:
gi|60348512|gb|DN215485.1|DN215485EST: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttcactggacaaggaaaattttgtatttattaagttatgttgtttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTTGTAAATGGGGTCTTGGAACTGATTTCTTCTGAAGCTACCTCCACTGAGC
aaaattttgtatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattacattgctgatggctaatattgactatacactgtctttgcttcttcactggacaaggaaaattttgtatttattaagttatgttgtttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTTGTAAATGGGGTCTTGGAACTGATTTCTTCTGAAGCTACCTCCACTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC