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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCAAATCCAATAACCAAATatcctttcttatatttggctgggtaattctttgtttttcatgatacttgtcaaactttctatgtccttaacgaataatcacat

Basic information

species Zea mays
transcript GRMZM2G105192_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105192_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g01100.2 (Oryza sativa), 5'ss of exon 9
GTGGCAAATCCAATAACCAAATatcctt----tcttatatttggctgggtaattctttgtttttcatga--tacttgtcaaactttctatgtccttaacgaataat-cacat--------
||||||||||||||||||||||||||||      | | ||||   |    |  |||    |    |  |  ||      ||   || ||| ||  || | | |  | || ||        
GTGGCAAATCCAATAACCAAatatccttggtgcatcagatttctttaatgagatctaatatcaaaacaaattaacctagaatagttatatttctgtagctatttgtgcaaatgaaataca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16926851|gb|BM079919.1|BM079919
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|16922011|gb|BM075387.1|BM075387
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|17929411|gb|BM266371.1|BM266371
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|110220376|gb|EC902274.1|EC902274
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|18162838|gb|BM332677.1|BM332677
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|29544356|gb|CB604736.1|CB604736
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCNCTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|17932564|gb|BM269524.1|BM269524
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|18173199|gb|BM348587.1|BM348587
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|113700925|gb|EE678429.1|EE678429
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|18166790|gb|BM336629.1|BM336629
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|71426677|gb|DR807727.1|DR807727
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTTGGAAGAGTTGCTTCCA
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTT-GGAAGAGTTGCTTCCA
EST: gi|71426676|gb|DR807726.1|DR807726
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|67019146|gb|CO447895.1|CO447895
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|110522223|gb|EE026407.1|EE026407
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|91876287|gb|EB406244.1|EB406244
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|76288379|gb|DV027947.1|DV027947
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
EST: gi|71446062|gb|DR827112.1|DR827112
EST:     ACGGTGGCAAATCCAATAACCAAAT                         ATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC
genomic: ACGGTGGCAAATCCAATAACCAAATatcctttctt ... ataatcacatATGCATTAACCATAACCCCACTGACTATGAGTTTGGAAGAGTTGCTTCCAC