Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatctgtgttcacctcatcagatgttaaatgcttattatgaatccgtgaggctaaagcatgctttcattgtag

Basic information

species Zea mays
transcript GRMZM2G105192_T04
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105192_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g01100.1 (Oryza sativa), 5'ss of exon 10
---------GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatctgtg-ttcacctcatcagatgt-taaatgcttatta-------tgaatccgtgaggctaaagcatgctttca-ttgtag
         | || || ||||| || |||||||||||||| || ||||||||||||||  | |  | || ||| ||   ||| |   |  | || ||        | |||  ||||||||||| |||| ||||  ||||||
CTTTGACAGGGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGgtaagtttttacggtttaccacagatgatatacgagagtttgtttttacggtttaattggtgaggctaaaacatgttttcggttgtag

upper sequence: GRMZM2G105192_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g01100.2 (Oryza sativa), 5'ss of exon 11
GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatctgtg-ttcacctcatcagatgt-taaatgcttattatga-------atccgtgaggctaaagcatgctttca-ttgtag
| || || ||||| || |||||||||||||| || ||||||||||||||  | |  | || ||| ||   ||| |   |  | || || | |       ||  ||||||||||| |||| ||||  ||||||
GGCTAGTTATGGCGTTGGTTGGTTCTTTACTCACCATGCTTGTGgtaagtttttacggtttaccacagatgatatacgagagtttgtttttacggtttaattggtgaggctaaaacatgttttcggttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16926851|gb|BM079919.1|BM079919
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|16922011|gb|BM075387.1|BM075387
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|17929411|gb|BM266371.1|BM266371
EST:     GACTTGTGATGGCATTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|110220376|gb|EC902274.1|EC902274
EST:     GACTTGGGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTTTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|18162838|gb|BM332677.1|BM332677
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|29544356|gb|CB604736.1|CB604736
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|17932564|gb|BM269524.1|BM269524
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|18173199|gb|BM348587.1|BM348587
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|113700925|gb|EE678429.1|EE678429
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|18166790|gb|BM336629.1|BM336629
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|71426676|gb|DR807726.1|DR807726
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|67019146|gb|CO447895.1|CO447895
EST:     GACTTTTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|110522223|gb|EE026407.1|EE026407
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTTTACCTTGCGCGTGCTTTTTAGCAATTTTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|91876287|gb|EB406244.1|EB406244
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTTTACCTTGCGCGTGCTTTTTAGCAATTTTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|76288379|gb|DV027947.1|DV027947
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: gi|71446062|gb|DR827112.1|DR827112
EST:     GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG                         ACCTATATTTTACCTTGCGCGTGCTTTTTAGCAATTTTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG