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gtaaggatctgtgttcacctcatcagatgttaaatgcttattatgaatccgtgaggctaaagcatgctttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGAGCTGGCACCAG
species | Zea mays |
transcript | GRMZM2G105192_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTTTACCTTGCGCGTGCTTTTTAGCAATTTTTAGGAGAAAAGTGEST: gi|18173199|gb|BM348587.1|BM348587
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|16926851|gb|BM079919.1|BM079919
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|71446062|gb|DR827112.1|DR827112
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTTTACCTTGCGCGTGCTTTTTAGCAATTTTTAGGAGAAAAGTGEST: gi|18162838|gb|BM332677.1|BM332677
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|110220376|gb|EC902274.1|EC902274
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGGGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTTTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|110522223|gb|EE026407.1|EE026407
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTTTACCTTGCGCGTGCTTTTTAGCAATTTTTAGGAGAAAAGTGEST: gi|29544356|gb|CB604736.1|CB604736
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|16922011|gb|BM075387.1|BM075387
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|113700925|gb|EE678429.1|EE678429
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|76288379|gb|DV027947.1|DV027947
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|18166790|gb|BM336629.1|BM336629
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|17929411|gb|BM266371.1|BM266371
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCATTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|17932564|gb|BM269524.1|BM269524
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|71426676|gb|DR807726.1|DR807726
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGEST: gi|67019146|gb|CO447895.1|CO447895
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
EST: GACTTTTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTG ACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
genomic: GACTTGTGATGGCCTTAGTTGGTTCTTTACTTACGATGCTTGTGgtaaggatct ... ttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTG
cagatgttaaatgcttattatgaatccgtgaggctaaagcatgctttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGAGCTGGCACCAG
ggctaaa putative branch site (score: 3)
ctttcatt putative PPT
ttaaatgcttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatctgtgttcacctcatcagatgttaaatgcttattatgaatccgtgaggctaaagcatgctttcattgtagACCTATATTCTACCTTGCGCGTGCTTTTTAGCAATTCTTAGGAGAAAAGTGAGCTGGCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA