ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GCTTAACTTCACTCCTATCAATGGAAAGCCTATCAGGATCATGTATTCTAACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttccttgatttcatcctctttgcttaacttcttgcgaggtcatctgtagattgcgtcaacttccttgggactagaaggttgcataagctgacttctgaatttttatacgccacattgactttccagttatggtacctgatcccctttgttctaattttgcag

Basic information

species	Zea mays
transcript	GRMZM2G102829_T03
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G102829_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g02700.1 (Oryza sativa), 5'ss of exon 2

GCTTAACTTCACTCCTATCAATGGAAAGCCTATCAGGATCATGTATTCTAACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgt---tccttgatttcatcctctttgcttaacttcttgcgaggtcatctg-tagattgcgtcaacttccttgggactagaaggttgcataagctgacttctgaatttttatacgccacattgactttccagttatggtacctgatcccctttgttctaattttgcag
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| || ||||||| |||||| ||||| ||||| | |    ||    ||  |  || |||  | | ||| ||     ||  | ||  |   ||  |   |||  ||  |                                                                                             
GCTCAACTTCACTCCTATCAATGGAAAACCTATCAGGATCATGTATTCTAACCGTGACCCCAGCTTGCGCAAGAGTGGCACAGCAAATATTTTTATCAAGgtatctgtgcccactcttgaaagctattttttcatcttttttttttgtagtttgacatcctgacttctcttttttcag---------------------------------------------------------------------------------------------

upper sequence: GRMZM2G102829_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv03s0063g00070.t01 (Vitis vinifera), 5'ss of exon 3

GCTTAACTTCACTCCTATCAATGGAAAGCCTATCAGGATCATGTATTCTAACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttccttgatttcatcctctttgcttaacttcttgcgaggtcatctgtagattgcgtcaacttccttgggactagaaggttgcataagctgacttctgaatttttatacgccacattgactttccagttatggtacctgatcccctttgttctaattttgcag
| | || ||||||||| ||||||||||||| || ||||| ||||||||  | |||||||||||    |||||||| || || |||||||||||||||||||| |      |   ||     | | ||||||| | | || |   |||    |||||||       ||  |  ||  |     |||   |   |||||     | ||   ||| ||    |  |||| ||||                                    
GTTGAATTTCACTCCTCTCAATGGAAAGCCAATTAGGATTATGTATTCCCATCGTGACCCTAGTATCCGCAAAAGTGGAACTGGAAATATATTTATTAAGgtat---taatatcttttggttttgtgcttaa-tgcatgtggtctcact--tagattgaaa-gggtttttcaggtttcatttgttttgtttcctgac---caagttaacatatgct--ttgaacttgccag------------------------------------

upper sequence: GRMZM2G102829_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0031g00210.t01 (Vitis vinifera), 5'ss of exon 2

GCTTAACTTCACTCCTATCAATGGAAAGCCTATCAGGATCATGTATTCTAACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttccttgatttcatcctctttgcttaacttcttgcgaggtcatctgtagattgcgtcaacttccttgggactagaaggttgcataagctgacttctgaatttttatacgccaca----ttgactttccagttatggtacctgatcccctttgttctaattttgcag------
| | |||||||||||| ||||||| ||||| || ||||| |||||||||   || || |||||    || | ||| || || |  ||||| ||||| |||||     |  | ||||  |  |  || ||    |  ||  ||     |   | ||||   |   ||    |||    | |   || | | |  |   ||      |   | |           || | ||     || |  |   |  |    | |||| | ||||||         
GTTGAACTTCACTCCTCTCAATGGGAAGCCAATTAGGATTATGTATTCTTTTCGAGATCCTAGTATTCGTAGAAGTGGGACCGCTAATATTTTTATCAAGgta----ctataattttgttgttgtttct----tctttatgattatgtacttggatt--cttgcctctggtggataaaaagattttctttaattctttttccctctccgacagattctgatatttaatttctttcttcttttgttttttgttttatgtttttattttgtgttggaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|18963395|gb|BM660411.1|BM660411

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|18964519|gb|BM661053.1|BM661053

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|94478793|gb|EB707751.1|EB707751

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|76287722|gb|DV027290.1|DV027290

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|87152528|gb|DY397317.1|DY397317

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|18964518|gb|BM661052.1|BM661052

EST:     ACCG-GACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|91872653|gb|EB402610.1|EB402610

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|19770298|gb|BQ035019.1|BQ035019

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|50339950|gb|CO535076.1|CO535076

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|60291829|gb|DN190068.1|DN190068

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|89247208|gb|DY618994.1|DY618994

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|71757068|gb|DR955005.1|DR955005

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|50339951|gb|CO535077.1|CO535077

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|91872652|gb|EB402609.1|EB402609

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|60400258|gb|DN233065.1|DN233065

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|61119220|gb|DN560181.1|DN560181

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|30705350|gb|CD058755.1|CD058755

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|20300457|gb|BQ163400.1|BQ163400

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|89249056|gb|DY620842.1|DY620842

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|76291689|gb|DV031257.1|DV031257

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|19770490|gb|BQ035211.1|BQ035211

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

EST: gi|78119331|gb|DV537715.1|DV537715

EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 971

GCTTAACTTCACTCCTATCAATGGAAAGCCTATCAGGATCATGTATTCTAACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCATTTGGGAATATACTTTCATGTAAAATTGCAACAGACCCTTCAGGAGAAT

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1034

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 589