1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCCAAGTCGGCGGCGTCGTCTCCGTGCGCGTCTGCAGGGACATCAACTCCCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactctgcagtattctcgatctgtcggttagggtttcggtgctgcggacgctgtcgaccccttgcgagaagccgtcggatttggcggttgttagt...
species | Zea mays |
transcript | GRMZM2G102829_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|32795710|gb|CD947946.1|CD947946
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCEST: gi|94478793|gb|EB707751.1|EB707751
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGC
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|76287722|gb|DV027290.1|DV027290
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|87152528|gb|DY397317.1|DY397317
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG TTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|32802614|gb|CD954850.1|CD954850
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAEST: gi|32802522|gb|CD954758.1|CD954758
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAEST: gi|6526941|gb|AW216188.1|AW216188
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACCTGCTTAACTTCACTCCTATCAATGGAAAGCCTEST: gi|37420628|gb|CF648009.1|CF648009
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAAC-TGCTTAACTTCACTCCTATCAATGGAAAGCCT
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|91872653|gb|EB402610.1|EB402610
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: GGGTACGCGTACGTCAAATACAACATCCAGGGCGGCG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCGAEST: gi|32802269|gb|CD954505.1|CD954505
genomic: GGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAEST: gi|19770298|gb|BQ035019.1|BQ035019
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTA
EST: CCGCAAGTCGCTCGGGTTCGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|50339950|gb|CO535076.1|CO535076
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|60291829|gb|DN190068.1|DN190068
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|89247208|gb|DY618994.1|DY618994
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|71757068|gb|DR955005.1|DR955005
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|50339951|gb|CO535077.1|CO535077
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|91872652|gb|EB402609.1|EB402609
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|60400258|gb|DN233065.1|DN233065
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|61119220|gb|DN560181.1|DN560181
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|32804742|gb|CD956978.1|CD956978
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTACTTAEST: gi|30705350|gb|CD058755.1|CD058755
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTA
EST: GTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|89249056|gb|DY620842.1|DY620842
genomic: GTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|76291689|gb|DV031257.1|DV031257
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTAEST: gi|78119331|gb|DV537715.1|DV537715
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
EST: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACG CTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
genomic: CCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactc ... tttattgcagCTGCACGAGCACTTGAACTGCTTAACTTCACTCCTATCAATGGAAAGCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCAAGTCGGCGGCGTCGTCTCCGTGCGCGTCTGCAGGGACATCAACTCCCGCAAGTCGCTCGGGTACGCCTACGTCAACTACAACAACCAGGGCGACGgtgagaactctgcagtattctcgatctgtcggttagggtttcggtgctgcggacgctgtcgaccccttgcgagaagccgtcggatttggcggttgttagt
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