1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgccacattattcactatgacttgtggtcctgtggaagtgtaacaaacaataaatcgagtatgtaatattctgtgtatgttgatgccaataaatggacagGTTTGTGACTGGATGTTCTCGTGGCCCCCTCCTTGGATTTCAGTATCTCGAACCGAAATTTTGCATTCAGAG
species | Zea mays |
transcript | GRMZM2G101098_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGGAGGTCTTGAAGAGCTTAAGTTCAGACAACCAGAAAAAATTTCTCAA GTTTGTGACTGGATGTTCTCGTGGCCCCCTCCTTGGATTTCAGTATCTCGAEST: gi|6020745|gb|AW065553.1|AW065553
genomic: TGGGAGGTCTTGAAGAGCTTAAGTTCAGACAACCAGAAAAAATTTCTCAAgttagtgtct ... aaatggacagGTTTGTGACTGGATGTTCTCGTGGCCCCCTCCTTGGATTTCAGTATCTCGA
EST: TGGGAGGTCTTGAAGAGCTTAAGTTCAGACAACCAGAAAAAATTTCTCAA GTTTGTGACTGGATGTTCTCGTGGCCCCCTCCTTGGATTTCAGTATCTCGAEST: gi|26456975|gb|CA828558.1|CA828558
genomic: TGGGAGGTCTTGAAGAGCTTAAGTTCAGACAACCAGAAAAAATTTCTCAAgttagtgtct ... aaatggacagGTTTGTGACTGGATGTTCTCGTGGCCCCCTCCTTGGATTTCAGTATCTCGA
EST: TGGGAGGTCTTGAAGAGCTTAAGTTCAGACAACCAGAAAAAATTTCTCAA GTTTGTGACTGGATGTTCTCGTGGCCCCCTCCTTGGATTTCAGTATCTCGA
genomic: TGGGAGGTCTTGAAGAGCTTAAGTTCAGACAACCAGAAAAAATTTCTCAAgttagtgtct ... aaatggacagGTTTGTGACTGGATGTTCTCGTGGCCCCCTCCTTGGATTTCAGTATCTCGA
aacaataaatcgagtatgtaatattctgtgtatgttgatgccaataaatggacagGTTTGTGACTGGATGTTCTCGTGGCCCCCTCCTTGGATTTCAGTATCTCGAACCGAAATTTTGCATTCAGAG
tgttgat putative branch site (score: 26)
tatgtaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgccacattattcactatgacttgtggtcctgtggaagtgtaacaaacaataaatcgagtatgtaatattctgtgtatgttgatgccaataaatggacagGTTTGTGACTGGATGTTCTCGTGGCCCCCTCCTTGGATTTCAGTATCTCGAACCGAAATTTTGCATTCAGAG
- - - - - - - - - - - - -ggtcctg
- - - - - - - - - - - - - - - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - - - - - -caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgcc