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...tatgacaaaaggtgacaaatatcaaatacacgcccccgcgctcgaaggtcagatcatttttgttgatcttatctagcgaagtgatggcttctttttccagGATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAAGTTCAGACAACCAGAAAAAATTTCTCAA
species | Zea mays |
transcript | GRMZM2G101098_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATATTGATGACTTGCGGTCGAACACCAACTATTCTGCAGGATATCATCCA GATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAEST: gi|20811283|gb|BQ295761.1|BQ295761
genomic: ATATTGATGACTTGCGGTCGAACACCAACTATTCTGCAGGATATCATCCAgtatgtgatt ... ctttttccagGATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTA
EST: ATATTGATGACTTGCGGTCGAACACCAACTATTCTGCAGGATATCATCCA GATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAAGTTCAEST: gi|6020745|gb|AW065553.1|AW065553
genomic: ATATTGATGACTTGCGGTCGAACACCAACTATTCTGCAGGATATCATCCAgtatgtgatt ... ctttttccagGATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAAGTTCA
EST: ATATTGATGACTTGCGGTCGAACACCAACTATTCTGCAGGATATCATCCA GATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAAGTTCAEST: gi|26456975|gb|CA828558.1|CA828558
genomic: ATATTGATGACTTGCGGTCGAACACCAACTATTCTGCAGGATATCATCCAgtatgtgatt ... ctttttccagGATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAAGTTCA
EST: ATATTGATGACTTGCGGTCGAACACCAACTATTCTGCAGGATATCATCCA GATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAAGTTCA
genomic: ATATTGATGACTTGCGGTCGAACACCAACTATTCTGCAGGATATCATCCAgtatgtgatt ... ctttttccagGATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAAGTTCA
aggtcagatcatttttgttgatcttatctagcgaagtgatggcttctttttccagGATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAAGTTCAGACAACCAGAAAAAATTTCTCAA
tgttgat putative branch site (score: 40)
tggcttctttttcc putative PPT
atcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgacaaaaggtgacaaatatcaaatacacgcccccgcgctcgaaggtcagatcatttttgttgatcttatctagcgaagtgatggcttctttttccagGATCATGAGCTTGTTGAGATGTTTTGGGAGGTCTTGAAGAGCTTAAGTTCAGACAACCAGAAAAAATTTCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- -gacaaaa
- - - - - - - - - - - - - - cacgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggc