Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacaaaacacagtttctattgaactttttttttgctgtaaatactgcaactttcatatttaacctatgaataactccatggccctttctttcttctctagTTCCTGACATGAAAGATATGAAAGGAGTTACCGTCGGATACGTTGCCTGCAAAGGGCAGTTAATCGGAGTATTCACTCTCTCGGATTCCTGCCGAACTGG

Basic information

species Zea mays
transcript GRMZM2G099191_T03
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354681|gb|CD439038.1|CD439038
EST:     TGTGTATATTGGGAACAAGAGGATTTTGTCAAGGGCCTCATGTGAAACAG                         TTCCTGACATGAAAGATATGAAAGGAGTTACCGTCGGATACGTTGCCTGCA
genomic: TGTGTATATTGGGAACAAGAGGATTTTGTCAAGGGCCTCATGTGAAACAGgttggttaac ... tcttctctagTTCCTGACATGAAAGATATGAAAGGAGTTACCGTCGGATACGTTGCCTGCA
EST: gi|149103410|gb|EE288800.2|EE288800
EST:     TGTGTATATTGGGAACAAGAGGATTTTGTCAAGGGCCTCATGTGAAACAG                         TTCCTGACATGAA
genomic: TGTGTATATTGGGAACAAGAGGATTTTGTCAAGGGCCTCATGTGAAACAGgttggttaac ... tcttctctagTTCCTGACATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaactttcatatttaacctatgaataactccatggccctttctttcttctctagTTCCTGACATGAAAGATATGAAAGGAGTTACCGTCGGATACGTTGCCTGCAAAGGGCAGTTAATCGGAGTATTCACTCTCTCGGATTCCTGCCGAACTGG
                      gaataac  putative branch site (score: 2)
                            ctccatggccctttct  CT-rich tract
     tttcatatttaa  TA-rich tract