1 5' 3' | 2 5' 3' | 3 5' 3' |
AACGTCTTGCTTTAATAAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccctttctttatcttgctttatgcacttacttttgttatttgttggagttggtcagaaatatatcatgtttctattcgacctcgtacttaagtt...
species | Zea mays |
transcript | GRMZM2G093535_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGACEST: gi|211213892|gb|FL469120.1|FL469120
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
EST: AAGRCAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGACEST: gi|32837519|gb|CD977197.1|CD977197
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
EST: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGACEST: gi|213167496|gb|FM196281.1|FM196281
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
EST: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGACEST: gi|211273115|gb|FL373254.1|FL373254
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
EST: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGACEST: gi|12970294|gb|BG266911.1|BG266911
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
EST: AAGACAGCAAAGGGCTGATGCTGCAAAGAA-CGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCCGAAGCACGGAAGTAACTGCAATATCATGGACEST: gi|32937462|gb|CF042281.1|CF042281
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
EST: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGACEST: gi|32944737|gb|CF049556.1|CF049556
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
EST: AAGGCAGCAAAGGGCTGATACTGCAAAGAAACGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGACEST: gi|32856684|gb|CD996365.1|CD996365
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
EST: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGACEST: gi|78026071|gb|DV494458.1|DV494458
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
EST: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTG CCAAGGAGCAGAGGAAGTCCGAAGCACGGAAGTAACTGCAATATCATGGAC
genomic: AAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccct ... tttatcgcagCCAAGGAGCAGAGGAAGTCGGAAGCACGGAAGTAACTGCAATATCATGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGTCTTGCTTTAATAAGACAGCAAAGGGCTGATGCTGCAAAGAAACGCGATGAGGAGAAAGCTGgtacatccctttctttatcttgctttatgcacttacttttgttatttgttggagttggtcagaaatatatcatgtttctattcgacctcgtacttaagtt
- - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagaaata