Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagtttggttgaaccaaaattcagtttttcatccttgtcttagatgatcaaataaactacgtaccgcagtattaaagttgctttgcatgtctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCACGAAGTGCGCAACATAGACAAGTTTTTCCAAATACGATGAACAGCAATG

Basic information

species Zea mays
transcript GRMZM2G093096_T04
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6021401|gb|AW066329.1|AW066329
EST:     ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAG                         CTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
genomic: ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAGgtatcatggg ... tctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
EST: gi|32849606|gb|CD989287.1|CD989287
EST:     TGCTGTTAGTCAG                         CTGGATGTGCAACCCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
genomic: TGCTGTTAGTCAGgtatcatggg ... tctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
EST: gi|60352422|gb|DN219395.1|DN219395
EST:     ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAG                         CTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
genomic: ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAGgtatcatggg ... tctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
EST: gi|60338470|gb|DN205443.1|DN205443
EST:     ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAG                         CTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
genomic: ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAGgtatcatggg ... tctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
EST: gi|166654720|gb|EG090357.1|EG090357
EST:     AAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAG                         CTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
genomic: AAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAGgtatcatggg ... tctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
EST: gi|60354452|gb|DN221425.1|DN221425
EST:     ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAG                         CTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA
genomic: ACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGATGCTGTTAGTCAGgtatcatggg ... tctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcaaataaactacgtaccgcagtattaaagttgctttgcatgtctacttcagCTGGATGTGCAAACCAAATTGTGCATCAGGGATGGTTTATACCGATTGGCACGAAGTGCGCAACATAGACAAGTTTTTCCAAATACGATGAACAGCAATG
                                             tctacttc  CT-rich tract
     aaataaacta  TA-rich tract