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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtcatttgttccctttttcgtttgtattagtcgacgttatttatgttctaccttctttaattattgtacctcttttgtccacaatagATATACCAAGAGGATTTGATGGAGTTGTTGCCCACTGACCAGATATGCAGCGGACATGAAAACATTGATATG

Basic information

species Zea mays
transcript GRMZM2G093096_T04
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015061|gb|DT942231.1|DT942231
EST:     ATACCTACCTGTTCAGTGAACAAAAGAATGTGAATGCATATGGTGAACAG                         ATATACCAAGAGGATTTGATGGAGTTGTTGCCCACTGACCAGATATGCAGC
genomic: ATACCTACCTGTTCAGTGAACAAAAGAATGTGAATGCATATGGTGAACAGgcaagtcatt ... tccacaatagATATACCAAGAGGATTTGATGGAGTTGTTGCCCACTGACCAGATATGCAGC
EST: gi|166477073|gb|EG149180.1|EG149180
EST:     ATACCTACCTGTTCAGTGAACAAAAGAATGTGAATGCATATGGTGAACAG                         ATATACCAAGAGGATTTGATGGAGTTGTTGCCCA
genomic: ATACCTACCTGTTCAGTGAACAAAAGAATGTGAATGCATATGGTGAACAGgcaagtcatt ... tccacaatagATATACCAAGAGGATTTGATGGAGTTGTTGCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacgttatttatgttctaccttctttaattattgtacctcttttgtccacaatagATATACCAAGAGGATTTGATGGAGTTGTTGCCCACTGACCAGATATGCAGCGGACATGAAAACATTGATATG
                      ctttaat  putative branch site (score: 4)
                                  tacctcttttgtcc  putative PPT
                    ttctttaattattgta  TA-rich tract