1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGATGATGAGGACGACGACGTGAGGAGGGCTCCTGAGAGGAGGCCCAGACAGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcacttgcattcaatgtcaatttcgtgtgccttggtgcgaatttgctggcttaaacgccgtgttttgctcacagctcaagagtgacctgagataga...
species | Zea mays |
transcript | GRMZM2G091151_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211068894|gb|FL067283.1|FL067283
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211066159|gb|FL067278.1|FL067278
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211068890|gb|FL067279.1|FL067279
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211068893|gb|FL067282.1|FL067282
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211066145|gb|FL067264.1|FL067264
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211066155|gb|FL067274.1|FL067274
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTACTTGTCAAATTTGEST: gi|211066152|gb|FL067271.1|FL067271
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|19821939|gb|BQ047963.1|BQ047963
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGNCAAATTTGEST: gi|211066151|gb|FL067270.1|FL067270
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGNGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211066150|gb|FL067269.1|FL067269
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211066157|gb|FL067276.1|FL067276
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211066147|gb|FL067266.1|FL067266
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTGEST: gi|211066156|gb|FL067275.1|FL067275
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
EST: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAG GTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
genomic: AGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcactt ... tgctctgcagGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTCAAATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGATGAGGACGACGACGTGAGGAGGGCTCCTGAGAGGAGGCCCAGACAGGTAGAGCTGCGCCGGGACTGCCCATACCTCGACACCGTGAACAGACAGgtgtgcacttgcattcaatgtcaatttcgtgtgccttggtgcgaatttgctggcttaaacgccgtgttttgctcacagctcaagagtgacctgagataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC