Sequence
atgc intronic sequence ATGC exonic sequence...taggacttcaggagttaggacaaacctaaatggatttgtactcgtgtagttactgcagtcaaagtatttttttgtaagtggaattttgcttttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAATTGTTGCTGTTGTGCCCTCTCCTTTTTCTATTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G088648_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g05660.1 (Oryza sativa), 3'ss of exon 7
---------------------------------------------------------------------------------------taggacttcaggagtta---ggacaaacctaaatggatttgtactcgtgtagtt------actgcagtcaaagtatttttttgtaagtggaattttgcttttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAATTGTTGCTGTTGTGCCCTCTCCTTTTTCTATTGCAG
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gtaacatatttttctgatcaaaaaacaaactgatactctatgttcctgctgttccaaagaactttctggtatctatttgcttttttatggcatttcaagcatcatgtggctatatgcacttacctgtgagatcatgtcatttccttcattttagtccaagtaattttgcataactg-aattttcttttttggt-agGCTAGAAGAATGGACGTTGTGTGGGGAGAGACTGCTGGTGTTGAAGGTCAATTGTTGCTACTATGCCCTGTCCTCTTTCTGTTGCAG
upper sequence: GRMZM2G088648_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G44190.3 (Glycine max), 3'ss of exon 6
----------------------------------------------------------------------------------------------taggacttcaggagttaggacaaacctaaatggatttgtactcgtgtagtt----actgcagtcaaagtatttttttgtaagtggaattttgcttttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAATTGTTGCTGTTGTGCCCTCTCCTTTTTCTATTGCAG
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gttacactaataaatagtttacttttactttctttttccttttctattttagttatattttacccaccctcacaaacattctatcatccttttcaatcatgattaaacttttctttttccttataacatttatagttaaatctttcagagctggactgaaaatatataatatttgatccatgtttttctgtattttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGCTGTTGTGTCCTATACTTTTCACATTGCAG
upper sequence: GRMZM2G088648_T01 (Zea mays), 3'ss of exon 7
lower sequence: AT1G33230.1 (Arabidopsis thaliana), 3'ss of exon 7
taggacttcaggagttaggacaaacctaaatggatttgtactcgtgtagttactgcagtcaaagtatttttttgtaagtg-gaattttgcttttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAATTGTTGCTGTTGTGCCCTCTCCTTTTTCTATTGCAG
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-----------gtgccatact--atttacatttttctctctccaaatcatatccaccactatgaaattgctgtaaaaatgtgtgtggtggtcattt-tcagGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCAACTATTGCTATTATTTCCTATTTTGTTCACTTTACAG
upper sequence: GRMZM2G088648_T01 (Zea mays), 3'ss of exon 7
lower sequence: PP1S89_217V6.1 (Physcomitrella patens), 3'ss of exon 8
---------taggacttcaggagttaggacaaacctaaatggatttgtactcgtgtagttactgcagtcaaagtatttttttgtaagtggaattttgcttttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAATTGTTGCTGTTGTGCCCTCTCCTTTTTCTATTGCAG
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acacaaagtaataatttttaaagaccggatcg-cacaggtcg-ttcgcattcaatgaattatatgatacgaggccttttctaatagagtggctgatgta-------cagGCTGGAAGGATGGATGTTGTATGGGGAGAGACGGCCGGTGTTAAAGGGCAACTTTGGGTTTTATATCCTCTCCTCTTTATTCTACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15005287|gb|BI325354.1|BI325354EST: AGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAG GCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAA
genomic: AGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAGgtgatattct ... tttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAA
EST:
gi|15005286|gb|BI325353.1|BI325353EST: AGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAG GCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAA
genomic: AGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAGgtgatattct ... tttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtagttactgcagtcaaagtatttttttgtaagtggaattttgcttttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAATTGTTGCTGTTGTGCCCTCTCCTTTTTCTATTGCAG
ttttgcttttc CT-rich tract
aaagtatttttttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taggacttcaggagttaggacaaacctaaatggatttgtactcgtgtagttactgcagtcaaagtatttttttgtaagtggaattttgcttttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAATTGTTGCTGTTGTGCCCTCTCCTTTTTCTATTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT