Sequence
atgc intronic sequence ATGC exonic sequenceGCTTGGTTGTTATTCCTGTATACTAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGCGATATTCGTCCTTGgtaaggatcactgatggtctggcatataatcatatctgaagaaaataatggtgttgtggcctgcggatagaggtggtaatggatcacgatacaaatgttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G088648_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g05660.1 (Oryza sativa), 5'ss of exon 5
GCTTGGTTGTTATTCCTGTATACTAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGCGATATTCGTCCTTGgtaaggatcactgatggtctggcatataatcatatctgaa-gaaaataatggtgttgtggcc-tgcggatagaggtggtaatggatcacgatacaaatgttc
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GCTTGGTTGTTGTTTCTGTATACAACTTTAGCTCTGCGAGAGAACATATTACGAGTTAATGGAAGTGATATCCGTCCTTGgtaaggggaaaaaaaaacaaaatttggaattgcccatatacaaaaatgaagagggtgtagccattcttgttctctaatttttgcatgtcagtagttacca--
upper sequence: GRMZM2G088648_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 5
GCTTGGTTGTTATTCCTGTATACTAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGCGATATTCGTCCTTGgtaaggatcactga---tggt-ctggcatataatcatatctgaagaaaataatggtgttgtggcctgcggatagaggtggtaatg-gatcacgatacaaatgttc
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GCCTGGCTGCTATTCCTTTACACCGGTTTGGCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTGgtatag-tcattaaacttgatgtttgcatg-gatcatagttaatgggtattgagttcctg-gttctatgctcgttgcttgttctttaatcacatgagtgaaac--
upper sequence: GRMZM2G088648_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 4
GCTTGGTTGTTATTCCTGTATACTAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGCGATATTCGTCCTTGgtaaggatcactga---tggtctggcatataatcatatctgaagaaaataatggtgttgtggcctgcggatagaggtggtaatggatcacgatacaaatgttc-
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GCGTGGCTGCTATTCCTTTACACCGGTTTGGCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTGgtatag-tcattaaacttgatgtttgaatggatcatagttaatgggtattgggttcctg-gttctatgcttgttgcttgt--tctttaatgacgtgagtgaaac
upper sequence: GRMZM2G088648_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 5
GCTTGGTTGTTATTCCTGTATACTAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGCGATATTCGTCCTTGgtaaggatcactgatggtctggcatataatcatatctgaagaaaataatggtgttgtggcctgcggatagaggtggtaatggatcacgatacaaatgttc---
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GCATGGCTGTTGTTCCTTTACACAGGTTTAGCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgtaattacatgtgatcttgtgccgttgaattttgtt--gagtgcttaact-tactgttttctatacttattgactgttatttattaatctgcttaggggacatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211458061|gb|FL124707.1|FL124707EST: GCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGCGATATTCGTCCTTG GTGGATACTTCATCACTACTCTGCCATGCTGATGTCTGTTATAAGTCTCAC
genomic: GCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGCGATATTCGTCCTTGgtaaggatca ... ctcccttaagGTGGATACTTCATCACTACTCTGCCATGCTGATGTCTGTTATAAGTCTCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTGGTTGTTATTCCTGTATACTAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGCGATATTCGTCCTTGgtaaggatcactgatggtctggcatataatcatatctgaagaaaataatggtgttgtggcctgcggatagaggtggtaatggatcacgatacaaatgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG